Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20495 and ABZR86_RS20500 overlap by 4 nucleotides ABZR86_RS20500 and ABZR86_RS20505 are separated by 21 nucleotides
ABZR86_RS20495: ABZR86_RS20495 - aldehyde dehydrogenase family protein, at 38,468 to 40,069
_RS20495
ABZR86_RS20500: ABZR86_RS20500 - Xaa-Pro peptidase family protein, at 40,066 to 41,271
_RS20500
ABZR86_RS20505: ABZR86_RS20505 - DUF885 family protein, at 41,293 to 43,056
_RS20505
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 39.122 kb on + strand, within ABZR86_RS20495 at 39.122 kb on + strand, within ABZR86_RS20495 at 39.872 kb on + strand, within ABZR86_RS20495 at 39.951 kb on - strand at 40.163 kb on - strand at 40.163 kb on - strand at 40.163 kb on - strand at 40.792 kb on + strand, within ABZR86_RS20500 at 40.793 kb on - strand, within ABZR86_RS20500 at 40.870 kb on + strand, within ABZR86_RS20500 at 40.871 kb on - strand, within ABZR86_RS20500 at 40.871 kb on - strand, within ABZR86_RS20500 at 41.203 kb on + strand at 41.203 kb on + strand at 41.204 kb on - strand at 41.204 kb on - strand at 41.204 kb on - strand at 41.395 kb on + strand at 41.590 kb on + strand, within ABZR86_RS20505 at 41.590 kb on + strand, within ABZR86_RS20505 at 41.590 kb on + strand, within ABZR86_RS20505 at 41.591 kb on - strand, within ABZR86_RS20505 at 41.793 kb on + strand, within ABZR86_RS20505 at 42.037 kb on + strand, within ABZR86_RS20505 at 42.037 kb on + strand, within ABZR86_RS20505 at 42.037 kb on + strand, within ABZR86_RS20505 at 42.038 kb on - strand, within ABZR86_RS20505 at 42.038 kb on - strand, within ABZR86_RS20505 at 42.040 kb on - strand, within ABZR86_RS20505 at 42.040 kb on - strand, within ABZR86_RS20505 at 42.098 kb on - strand, within ABZR86_RS20505
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 39,122 + ABZR86_RS20495 0.41 -3.0 39,122 + ABZR86_RS20495 0.41 +1.6 39,872 + ABZR86_RS20495 0.88 +0.6 39,951 - -1.3 40,163 - +0.2 40,163 - -0.5 40,163 - +0.6 40,792 + ABZR86_RS20500 0.60 +1.0 40,793 - ABZR86_RS20500 0.60 +0.2 40,870 + ABZR86_RS20500 0.67 +0.0 40,871 - ABZR86_RS20500 0.67 -1.9 40,871 - ABZR86_RS20500 0.67 +0.1 41,203 + -1.0 41,203 + +0.8 41,204 - +1.3 41,204 - -0.1 41,204 - +0.3 41,395 + -2.0 41,590 + ABZR86_RS20505 0.17 +0.6 41,590 + ABZR86_RS20505 0.17 +0.6 41,590 + ABZR86_RS20505 0.17 -0.1 41,591 - ABZR86_RS20505 0.17 +0.6 41,793 + ABZR86_RS20505 0.28 -0.5 42,037 + ABZR86_RS20505 0.42 -0.3 42,037 + ABZR86_RS20505 0.42 +0.5 42,037 + ABZR86_RS20505 0.42 -0.0 42,038 - ABZR86_RS20505 0.42 +0.6 42,038 - ABZR86_RS20505 0.42 +0.5 42,040 - ABZR86_RS20505 0.42 -0.2 42,040 - ABZR86_RS20505 0.42 +0.0 42,098 - ABZR86_RS20505 0.46 +1.1
Or see this region's nucleotide sequence