Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS20225 and ABZR86_RS20230 overlap by 1 nucleotides ABZR86_RS20230 and ABZR86_RS20235 are separated by 97 nucleotides ABZR86_RS20235 and ABZR86_RS20240 overlap by 4 nucleotides ABZR86_RS20240 and ABZR86_RS20245 are separated by 15 nucleotides
ABZR86_RS20225: ABZR86_RS20225 - flagellar biosynthetic protein FliO, at 537,031 to 537,402
_RS20225
ABZR86_RS20230: ABZR86_RS20230 - flagellar type III secretion system pore protein FliP, at 537,402 to 538,142
_RS20230
ABZR86_RS20235: ABZR86_RS20235 - flagellar biosynthesis protein FliQ, at 538,240 to 538,509
_RS20235
ABZR86_RS20240: ABZR86_RS20240 - flagellar biosynthetic protein FliR, at 538,506 to 539,276
_RS20240
ABZR86_RS20245: ABZR86_RS20245 - flagellar biosynthesis protein FlhB, at 539,292 to 540,425
_RS20245
Position (kb) 538
539 Strain fitness (log2 ratio) -2
-1
0
1 at 537.408 kb on + strand at 537.750 kb on + strand, within ABZR86_RS20230 at 537.750 kb on + strand, within ABZR86_RS20230 at 537.751 kb on - strand, within ABZR86_RS20230 at 537.752 kb on + strand, within ABZR86_RS20230 at 537.753 kb on - strand, within ABZR86_RS20230 at 537.753 kb on - strand, within ABZR86_RS20230 at 537.753 kb on - strand, within ABZR86_RS20230 at 538.087 kb on + strand at 538.171 kb on - strand at 538.171 kb on - strand at 538.209 kb on + strand at 538.283 kb on - strand, within ABZR86_RS20235 at 538.511 kb on + strand at 538.511 kb on + strand at 538.512 kb on - strand at 538.512 kb on - strand at 538.887 kb on + strand, within ABZR86_RS20240 at 538.888 kb on - strand, within ABZR86_RS20240 at 539.472 kb on + strand, within ABZR86_RS20245 at 539.472 kb on + strand, within ABZR86_RS20245 at 539.473 kb on - strand, within ABZR86_RS20245
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 537,408 + -0.4 537,750 + ABZR86_RS20230 0.47 +0.4 537,750 + ABZR86_RS20230 0.47 -0.3 537,751 - ABZR86_RS20230 0.47 +0.5 537,752 + ABZR86_RS20230 0.47 +0.1 537,753 - ABZR86_RS20230 0.47 -0.8 537,753 - ABZR86_RS20230 0.47 +0.1 537,753 - ABZR86_RS20230 0.47 -0.8 538,087 + +0.5 538,171 - -0.0 538,171 - +0.7 538,209 + -0.8 538,283 - ABZR86_RS20235 0.16 +0.7 538,511 + +0.4 538,511 + +1.0 538,512 - +0.8 538,512 - +0.9 538,887 + ABZR86_RS20240 0.49 +0.3 538,888 - ABZR86_RS20240 0.50 +1.2 539,472 + ABZR86_RS20245 0.16 -0.0 539,472 + ABZR86_RS20245 0.16 -0.8 539,473 - ABZR86_RS20245 0.16 -2.1
Or see this region's nucleotide sequence