Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17870

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17865 and ABZR86_RS17870 are separated by 211 nucleotidesABZR86_RS17870 and ABZR86_RS17875 are separated by 142 nucleotidesABZR86_RS17875 and ABZR86_RS17880 are separated by 59 nucleotides ABZR86_RS17865: ABZR86_RS17865 - MFS transporter, at 4,028,178 to 4,029,695 _RS17865 ABZR86_RS17870: ABZR86_RS17870 - LysR family transcriptional regulator, at 4,029,907 to 4,030,773 _RS17870 ABZR86_RS17875: ABZR86_RS17875 - hypothetical protein, at 4,030,916 to 4,031,515 _RS17875 ABZR86_RS17880: ABZR86_RS17880 - hypothetical protein, at 4,031,575 to 4,032,057 _RS17880 Position (kb) 4029 4030 4031Strain fitness (log2 ratio) -1 0 1at 4028.959 kb on + strand, within ABZR86_RS17865at 4029.067 kb on - strand, within ABZR86_RS17865at 4029.084 kb on + strand, within ABZR86_RS17865at 4029.084 kb on + strand, within ABZR86_RS17865at 4029.085 kb on - strand, within ABZR86_RS17865at 4029.085 kb on - strand, within ABZR86_RS17865at 4029.085 kb on - strand, within ABZR86_RS17865at 4029.532 kb on + strand, within ABZR86_RS17865at 4029.532 kb on + strand, within ABZR86_RS17865at 4029.701 kb on - strandat 4029.772 kb on + strandat 4029.772 kb on + strandat 4029.773 kb on - strandat 4029.834 kb on - strandat 4030.057 kb on + strand, within ABZR86_RS17870at 4030.112 kb on - strand, within ABZR86_RS17870at 4030.569 kb on - strand, within ABZR86_RS17870at 4030.569 kb on - strand, within ABZR86_RS17870at 4030.771 kb on + strandat 4030.772 kb on - strandat 4030.786 kb on + strandat 4030.787 kb on - strandat 4030.874 kb on + strandat 4030.874 kb on + strandat 4030.875 kb on - strandat 4030.884 kb on + strandat 4030.884 kb on + strandat 4030.936 kb on - strandat 4030.936 kb on - strandat 4030.936 kb on - strandat 4031.136 kb on - strand, within ABZR86_RS17875at 4031.435 kb on - strand, within ABZR86_RS17875at 4031.483 kb on + strandat 4031.483 kb on + strandat 4031.483 kb on + strandat 4031.487 kb on + strandat 4031.487 kb on + strandat 4031.488 kb on - strandat 4031.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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4,028,959 + ABZR86_RS17865 0.51 +0.3
4,029,067 - ABZR86_RS17865 0.59 +0.0
4,029,084 + ABZR86_RS17865 0.60 +0.4
4,029,084 + ABZR86_RS17865 0.60 -0.2
4,029,085 - ABZR86_RS17865 0.60 -0.4
4,029,085 - ABZR86_RS17865 0.60 -0.3
4,029,085 - ABZR86_RS17865 0.60 +0.7
4,029,532 + ABZR86_RS17865 0.89 +0.6
4,029,532 + ABZR86_RS17865 0.89 +0.6
4,029,701 - +0.2
4,029,772 + -0.1
4,029,772 + +0.9
4,029,773 - +0.2
4,029,834 - +1.1
4,030,057 + ABZR86_RS17870 0.17 -0.2
4,030,112 - ABZR86_RS17870 0.24 -0.0
4,030,569 - ABZR86_RS17870 0.76 +0.5
4,030,569 - ABZR86_RS17870 0.76 +1.3
4,030,771 + -0.1
4,030,772 - +1.4
4,030,786 + -0.0
4,030,787 - -0.2
4,030,874 + -0.0
4,030,874 + -0.3
4,030,875 - -0.2
4,030,884 + +0.4
4,030,884 + +1.5
4,030,936 - -0.3
4,030,936 - +0.5
4,030,936 - +0.6
4,031,136 - ABZR86_RS17875 0.37 +0.2
4,031,435 - ABZR86_RS17875 0.86 -0.6
4,031,483 + +0.3
4,031,483 + +1.6
4,031,483 + +0.7
4,031,487 + -1.2
4,031,487 + -0.0
4,031,488 - -1.1
4,031,488 - +0.9

Or see this region's nucleotide sequence