Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS17865 and ABZR86_RS17870 are separated by 211 nucleotides ABZR86_RS17870 and ABZR86_RS17875 are separated by 142 nucleotides ABZR86_RS17875 and ABZR86_RS17880 are separated by 59 nucleotides
ABZR86_RS17865: ABZR86_RS17865 - MFS transporter, at 4,028,178 to 4,029,695
_RS17865
ABZR86_RS17870: ABZR86_RS17870 - LysR family transcriptional regulator, at 4,029,907 to 4,030,773
_RS17870
ABZR86_RS17875: ABZR86_RS17875 - hypothetical protein, at 4,030,916 to 4,031,515
_RS17875
ABZR86_RS17880: ABZR86_RS17880 - hypothetical protein, at 4,031,575 to 4,032,057
_RS17880
Position (kb)
4029
4030
4031 Strain fitness (log2 ratio)
-1
0
1 at 4028.959 kb on + strand, within ABZR86_RS17865 at 4029.067 kb on - strand, within ABZR86_RS17865 at 4029.084 kb on + strand, within ABZR86_RS17865 at 4029.084 kb on + strand, within ABZR86_RS17865 at 4029.085 kb on - strand, within ABZR86_RS17865 at 4029.085 kb on - strand, within ABZR86_RS17865 at 4029.085 kb on - strand, within ABZR86_RS17865 at 4029.532 kb on + strand, within ABZR86_RS17865 at 4029.532 kb on + strand, within ABZR86_RS17865 at 4029.701 kb on - strand at 4029.772 kb on + strand at 4029.772 kb on + strand at 4029.773 kb on - strand at 4029.834 kb on - strand at 4030.057 kb on + strand, within ABZR86_RS17870 at 4030.112 kb on - strand, within ABZR86_RS17870 at 4030.569 kb on - strand, within ABZR86_RS17870 at 4030.569 kb on - strand, within ABZR86_RS17870 at 4030.771 kb on + strand at 4030.772 kb on - strand at 4030.786 kb on + strand at 4030.787 kb on - strand at 4030.874 kb on + strand at 4030.874 kb on + strand at 4030.875 kb on - strand at 4030.884 kb on + strand at 4030.884 kb on + strand at 4030.936 kb on - strand at 4030.936 kb on - strand at 4030.936 kb on - strand at 4031.136 kb on - strand, within ABZR86_RS17875 at 4031.435 kb on - strand, within ABZR86_RS17875 at 4031.483 kb on + strand at 4031.483 kb on + strand at 4031.483 kb on + strand at 4031.487 kb on + strand at 4031.487 kb on + strand at 4031.488 kb on - strand at 4031.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,028,959 + ABZR86_RS17865 0.51 +0.3 4,029,067 - ABZR86_RS17865 0.59 +0.0 4,029,084 + ABZR86_RS17865 0.60 +0.4 4,029,084 + ABZR86_RS17865 0.60 -0.2 4,029,085 - ABZR86_RS17865 0.60 -0.4 4,029,085 - ABZR86_RS17865 0.60 -0.3 4,029,085 - ABZR86_RS17865 0.60 +0.7 4,029,532 + ABZR86_RS17865 0.89 +0.6 4,029,532 + ABZR86_RS17865 0.89 +0.6 4,029,701 - +0.2 4,029,772 + -0.1 4,029,772 + +0.9 4,029,773 - +0.2 4,029,834 - +1.1 4,030,057 + ABZR86_RS17870 0.17 -0.2 4,030,112 - ABZR86_RS17870 0.24 -0.0 4,030,569 - ABZR86_RS17870 0.76 +0.5 4,030,569 - ABZR86_RS17870 0.76 +1.3 4,030,771 + -0.1 4,030,772 - +1.4 4,030,786 + -0.0 4,030,787 - -0.2 4,030,874 + -0.0 4,030,874 + -0.3 4,030,875 - -0.2 4,030,884 + +0.4 4,030,884 + +1.5 4,030,936 - -0.3 4,030,936 - +0.5 4,030,936 - +0.6 4,031,136 - ABZR86_RS17875 0.37 +0.2 4,031,435 - ABZR86_RS17875 0.86 -0.6 4,031,483 + +0.3 4,031,483 + +1.6 4,031,483 + +0.7 4,031,487 + -1.2 4,031,487 + -0.0 4,031,488 - -1.1 4,031,488 - +0.9
Or see this region's nucleotide sequence