Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS16570 and ABZR86_RS16575 are separated by 5 nucleotides ABZR86_RS16575 and ABZR86_RS16580 are separated by 58 nucleotides ABZR86_RS16580 and ABZR86_RS16585 are separated by 18 nucleotides ABZR86_RS16585 and ABZR86_RS16590 are separated by 307 nucleotides
ABZR86_RS16570: ABZR86_RS16570 - glutathione S-transferase family protein, at 3,741,483 to 3,742,169
_RS16570
ABZR86_RS16575: ABZR86_RS16575 - hypothetical protein, at 3,742,175 to 3,742,717
_RS16575
ABZR86_RS16580: ABZR86_RS16580 - Pr6Pr family membrane protein, at 3,742,776 to 3,743,435
_RS16580
ABZR86_RS16585: ABZR86_RS16585 - TMEM175 family protein, at 3,743,454 to 3,744,095
_RS16585
ABZR86_RS16590: ABZR86_RS16590 - RHS repeat-associated core domain-containing protein, at 3,744,403 to 3,745,272
_RS16590
Position (kb)
3742
3743
3744 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3741.966 kb on + strand, within ABZR86_RS16570 at 3741.982 kb on - strand, within ABZR86_RS16570 at 3741.996 kb on + strand, within ABZR86_RS16570 at 3741.996 kb on + strand, within ABZR86_RS16570 at 3741.997 kb on - strand, within ABZR86_RS16570 at 3741.997 kb on - strand, within ABZR86_RS16570 at 3741.997 kb on - strand, within ABZR86_RS16570 at 3742.071 kb on + strand, within ABZR86_RS16570 at 3742.071 kb on + strand, within ABZR86_RS16570 at 3742.177 kb on - strand at 3742.288 kb on - strand, within ABZR86_RS16575 at 3742.352 kb on - strand, within ABZR86_RS16575 at 3742.711 kb on + strand at 3742.712 kb on - strand at 3742.936 kb on + strand, within ABZR86_RS16580 at 3742.937 kb on - strand, within ABZR86_RS16580 at 3742.969 kb on + strand, within ABZR86_RS16580 at 3742.978 kb on + strand, within ABZR86_RS16580 at 3742.979 kb on - strand, within ABZR86_RS16580 at 3743.054 kb on - strand, within ABZR86_RS16580 at 3743.273 kb on + strand, within ABZR86_RS16580 at 3743.274 kb on - strand, within ABZR86_RS16580 at 3743.290 kb on + strand, within ABZR86_RS16580 at 3743.312 kb on + strand, within ABZR86_RS16580 at 3743.313 kb on - strand, within ABZR86_RS16580 at 3743.509 kb on + strand at 3743.510 kb on - strand at 3743.510 kb on - strand at 3743.666 kb on - strand, within ABZR86_RS16585 at 3743.735 kb on - strand, within ABZR86_RS16585 at 3743.735 kb on - strand, within ABZR86_RS16585 at 3743.849 kb on - strand, within ABZR86_RS16585 at 3743.849 kb on - strand, within ABZR86_RS16585 at 3743.962 kb on + strand, within ABZR86_RS16585 at 3743.962 kb on + strand, within ABZR86_RS16585 at 3743.963 kb on - strand, within ABZR86_RS16585 at 3743.963 kb on - strand, within ABZR86_RS16585 at 3744.139 kb on + strand at 3744.217 kb on - strand at 3744.251 kb on + strand at 3744.251 kb on + strand at 3744.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,741,966 + ABZR86_RS16570 0.70 -0.4 3,741,982 - ABZR86_RS16570 0.73 +1.6 3,741,996 + ABZR86_RS16570 0.75 -3.0 3,741,996 + ABZR86_RS16570 0.75 +0.6 3,741,997 - ABZR86_RS16570 0.75 +0.6 3,741,997 - ABZR86_RS16570 0.75 +0.1 3,741,997 - ABZR86_RS16570 0.75 -0.7 3,742,071 + ABZR86_RS16570 0.86 -0.8 3,742,071 + ABZR86_RS16570 0.86 +0.1 3,742,177 - +0.4 3,742,288 - ABZR86_RS16575 0.21 +0.1 3,742,352 - ABZR86_RS16575 0.33 +0.8 3,742,711 + -0.1 3,742,712 - -0.4 3,742,936 + ABZR86_RS16580 0.24 +0.9 3,742,937 - ABZR86_RS16580 0.24 -0.0 3,742,969 + ABZR86_RS16580 0.29 -0.5 3,742,978 + ABZR86_RS16580 0.31 -0.3 3,742,979 - ABZR86_RS16580 0.31 +0.1 3,743,054 - ABZR86_RS16580 0.42 +0.6 3,743,273 + ABZR86_RS16580 0.75 -0.1 3,743,274 - ABZR86_RS16580 0.75 +1.6 3,743,290 + ABZR86_RS16580 0.78 +0.3 3,743,312 + ABZR86_RS16580 0.81 -0.3 3,743,313 - ABZR86_RS16580 0.81 +0.6 3,743,509 + +0.3 3,743,510 - -0.3 3,743,510 - +0.4 3,743,666 - ABZR86_RS16585 0.33 -0.4 3,743,735 - ABZR86_RS16585 0.44 -2.3 3,743,735 - ABZR86_RS16585 0.44 -0.7 3,743,849 - ABZR86_RS16585 0.62 +0.2 3,743,849 - ABZR86_RS16585 0.62 +0.2 3,743,962 + ABZR86_RS16585 0.79 -0.2 3,743,962 + ABZR86_RS16585 0.79 -1.3 3,743,963 - ABZR86_RS16585 0.79 +1.2 3,743,963 - ABZR86_RS16585 0.79 +0.3 3,744,139 + +0.2 3,744,217 - -0.9 3,744,251 + -2.1 3,744,251 + -0.2 3,744,345 + -1.1
Or see this region's nucleotide sequence