Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14300

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14295 and ABZR86_RS14300 are separated by 640 nucleotidesABZR86_RS14300 and ABZR86_RS14305 overlap by 4 nucleotides ABZR86_RS14295: ABZR86_RS14295 - NAD(P)/FAD-dependent oxidoreductase, at 3,180,970 to 3,182,637 _RS14295 ABZR86_RS14300: ABZR86_RS14300 - PAS and helix-turn-helix domain-containing protein, at 3,183,278 to 3,184,084 _RS14300 ABZR86_RS14305: ABZR86_RS14305 - glycoside hydrolase family 30 beta sandwich domain-containing protein, at 3,184,081 to 3,185,601 _RS14305 Position (kb) 3183 3184 3185Strain fitness (log2 ratio) -1 0 1 2at 3182.416 kb on + strand, within ABZR86_RS14295at 3182.548 kb on + strandat 3182.583 kb on + strandat 3182.712 kb on - strandat 3182.831 kb on - strandat 3183.027 kb on + strandat 3183.031 kb on + strandat 3183.032 kb on - strandat 3183.130 kb on - strandat 3183.494 kb on + strand, within ABZR86_RS14300at 3183.494 kb on + strand, within ABZR86_RS14300at 3183.495 kb on - strand, within ABZR86_RS14300at 3183.495 kb on - strand, within ABZR86_RS14300at 3183.495 kb on - strand, within ABZR86_RS14300at 3183.728 kb on + strand, within ABZR86_RS14300at 3183.728 kb on + strand, within ABZR86_RS14300at 3183.729 kb on - strand, within ABZR86_RS14300at 3183.729 kb on - strand, within ABZR86_RS14300at 3183.729 kb on - strand, within ABZR86_RS14300at 3183.791 kb on + strand, within ABZR86_RS14300at 3183.791 kb on + strand, within ABZR86_RS14300at 3183.791 kb on + strand, within ABZR86_RS14300at 3183.792 kb on - strand, within ABZR86_RS14300at 3183.863 kb on + strand, within ABZR86_RS14300at 3183.863 kb on + strand, within ABZR86_RS14300at 3183.863 kb on + strand, within ABZR86_RS14300at 3183.941 kb on + strand, within ABZR86_RS14300at 3183.941 kb on + strand, within ABZR86_RS14300at 3183.942 kb on - strand, within ABZR86_RS14300at 3183.944 kb on + strand, within ABZR86_RS14300at 3183.945 kb on - strand, within ABZR86_RS14300at 3183.945 kb on - strand, within ABZR86_RS14300at 3184.161 kb on + strandat 3184.374 kb on - strand, within ABZR86_RS14305at 3184.374 kb on - strand, within ABZR86_RS14305at 3184.374 kb on - strand, within ABZR86_RS14305at 3184.374 kb on - strand, within ABZR86_RS14305at 3184.374 kb on - strand, within ABZR86_RS14305at 3184.374 kb on - strand, within ABZR86_RS14305at 3184.377 kb on - strand, within ABZR86_RS14305at 3184.377 kb on - strand, within ABZR86_RS14305at 3184.490 kb on + strand, within ABZR86_RS14305at 3184.491 kb on - strand, within ABZR86_RS14305at 3184.604 kb on + strand, within ABZR86_RS14305at 3184.664 kb on + strand, within ABZR86_RS14305at 3184.664 kb on + strand, within ABZR86_RS14305at 3184.665 kb on - strand, within ABZR86_RS14305at 3184.665 kb on - strand, within ABZR86_RS14305at 3184.665 kb on - strand, within ABZR86_RS14305at 3184.692 kb on - strand, within ABZR86_RS14305at 3184.808 kb on + strand, within ABZR86_RS14305at 3184.809 kb on - strand, within ABZR86_RS14305at 3184.859 kb on + strand, within ABZR86_RS14305at 3184.953 kb on - strand, within ABZR86_RS14305at 3184.961 kb on + strand, within ABZR86_RS14305at 3184.961 kb on + strand, within ABZR86_RS14305at 3184.961 kb on + strand, within ABZR86_RS14305at 3184.962 kb on - strand, within ABZR86_RS14305at 3184.962 kb on - strand, within ABZR86_RS14305at 3184.962 kb on - strand, within ABZR86_RS14305at 3184.973 kb on + strand, within ABZR86_RS14305at 3184.974 kb on - strand, within ABZR86_RS14305at 3184.974 kb on - strand, within ABZR86_RS14305at 3184.974 kb on - strand, within ABZR86_RS14305

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,182,416 + ABZR86_RS14295 0.87 -0.4
3,182,548 + +0.6
3,182,583 + -0.4
3,182,712 - +0.1
3,182,831 - +0.5
3,183,027 + -1.0
3,183,031 + -1.3
3,183,032 - +0.6
3,183,130 - +1.7
3,183,494 + ABZR86_RS14300 0.27 +0.9
3,183,494 + ABZR86_RS14300 0.27 +0.0
3,183,495 - ABZR86_RS14300 0.27 -0.5
3,183,495 - ABZR86_RS14300 0.27 -1.4
3,183,495 - ABZR86_RS14300 0.27 -1.4
3,183,728 + ABZR86_RS14300 0.56 +0.1
3,183,728 + ABZR86_RS14300 0.56 -0.3
3,183,729 - ABZR86_RS14300 0.56 +0.4
3,183,729 - ABZR86_RS14300 0.56 -0.5
3,183,729 - ABZR86_RS14300 0.56 +0.4
3,183,791 + ABZR86_RS14300 0.64 -1.6
3,183,791 + ABZR86_RS14300 0.64 -1.5
3,183,791 + ABZR86_RS14300 0.64 +0.4
3,183,792 - ABZR86_RS14300 0.64 -0.4
3,183,863 + ABZR86_RS14300 0.72 -1.3
3,183,863 + ABZR86_RS14300 0.72 +0.5
3,183,863 + ABZR86_RS14300 0.72 -0.6
3,183,941 + ABZR86_RS14300 0.82 +1.3
3,183,941 + ABZR86_RS14300 0.82 +0.6
3,183,942 - ABZR86_RS14300 0.82 -0.1
3,183,944 + ABZR86_RS14300 0.83 +2.3
3,183,945 - ABZR86_RS14300 0.83 -0.5
3,183,945 - ABZR86_RS14300 0.83 -0.5
3,184,161 + +0.4
3,184,374 - ABZR86_RS14305 0.19 +1.3
3,184,374 - ABZR86_RS14305 0.19 +1.1
3,184,374 - ABZR86_RS14305 0.19 +0.5
3,184,374 - ABZR86_RS14305 0.19 -0.1
3,184,374 - ABZR86_RS14305 0.19 -1.0
3,184,374 - ABZR86_RS14305 0.19 -0.9
3,184,377 - ABZR86_RS14305 0.19 +0.1
3,184,377 - ABZR86_RS14305 0.19 -0.3
3,184,490 + ABZR86_RS14305 0.27 +0.1
3,184,491 - ABZR86_RS14305 0.27 +0.6
3,184,604 + ABZR86_RS14305 0.34 +0.3
3,184,664 + ABZR86_RS14305 0.38 +0.2
3,184,664 + ABZR86_RS14305 0.38 +2.2
3,184,665 - ABZR86_RS14305 0.38 +0.5
3,184,665 - ABZR86_RS14305 0.38 +0.5
3,184,665 - ABZR86_RS14305 0.38 +0.5
3,184,692 - ABZR86_RS14305 0.40 -0.4
3,184,808 + ABZR86_RS14305 0.48 -0.8
3,184,809 - ABZR86_RS14305 0.48 +0.8
3,184,859 + ABZR86_RS14305 0.51 -1.0
3,184,953 - ABZR86_RS14305 0.57 -0.4
3,184,961 + ABZR86_RS14305 0.58 -1.1
3,184,961 + ABZR86_RS14305 0.58 +0.5
3,184,961 + ABZR86_RS14305 0.58 +1.1
3,184,962 - ABZR86_RS14305 0.58 -0.1
3,184,962 - ABZR86_RS14305 0.58 +1.1
3,184,962 - ABZR86_RS14305 0.58 -0.5
3,184,973 + ABZR86_RS14305 0.59 +0.3
3,184,974 - ABZR86_RS14305 0.59 -0.4
3,184,974 - ABZR86_RS14305 0.59 +0.5
3,184,974 - ABZR86_RS14305 0.59 +0.2

Or see this region's nucleotide sequence