Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14295 and ABZR86_RS14300 are separated by 640 nucleotides ABZR86_RS14300 and ABZR86_RS14305 overlap by 4 nucleotides
ABZR86_RS14295: ABZR86_RS14295 - NAD(P)/FAD-dependent oxidoreductase, at 3,180,970 to 3,182,637
_RS14295
ABZR86_RS14300: ABZR86_RS14300 - PAS and helix-turn-helix domain-containing protein, at 3,183,278 to 3,184,084
_RS14300
ABZR86_RS14305: ABZR86_RS14305 - glycoside hydrolase family 30 beta sandwich domain-containing protein, at 3,184,081 to 3,185,601
_RS14305
Position (kb)
3183
3184
3185 Strain fitness (log2 ratio)
-1
0
1
2 at 3182.416 kb on + strand, within ABZR86_RS14295 at 3182.548 kb on + strand at 3182.583 kb on + strand at 3182.712 kb on - strand at 3182.831 kb on - strand at 3183.027 kb on + strand at 3183.031 kb on + strand at 3183.032 kb on - strand at 3183.130 kb on - strand at 3183.494 kb on + strand, within ABZR86_RS14300 at 3183.494 kb on + strand, within ABZR86_RS14300 at 3183.495 kb on - strand, within ABZR86_RS14300 at 3183.495 kb on - strand, within ABZR86_RS14300 at 3183.495 kb on - strand, within ABZR86_RS14300 at 3183.728 kb on + strand, within ABZR86_RS14300 at 3183.728 kb on + strand, within ABZR86_RS14300 at 3183.729 kb on - strand, within ABZR86_RS14300 at 3183.729 kb on - strand, within ABZR86_RS14300 at 3183.729 kb on - strand, within ABZR86_RS14300 at 3183.791 kb on + strand, within ABZR86_RS14300 at 3183.791 kb on + strand, within ABZR86_RS14300 at 3183.791 kb on + strand, within ABZR86_RS14300 at 3183.792 kb on - strand, within ABZR86_RS14300 at 3183.863 kb on + strand, within ABZR86_RS14300 at 3183.863 kb on + strand, within ABZR86_RS14300 at 3183.863 kb on + strand, within ABZR86_RS14300 at 3183.941 kb on + strand, within ABZR86_RS14300 at 3183.941 kb on + strand, within ABZR86_RS14300 at 3183.942 kb on - strand, within ABZR86_RS14300 at 3183.944 kb on + strand, within ABZR86_RS14300 at 3183.945 kb on - strand, within ABZR86_RS14300 at 3183.945 kb on - strand, within ABZR86_RS14300 at 3184.161 kb on + strand at 3184.374 kb on - strand, within ABZR86_RS14305 at 3184.374 kb on - strand, within ABZR86_RS14305 at 3184.374 kb on - strand, within ABZR86_RS14305 at 3184.374 kb on - strand, within ABZR86_RS14305 at 3184.374 kb on - strand, within ABZR86_RS14305 at 3184.374 kb on - strand, within ABZR86_RS14305 at 3184.377 kb on - strand, within ABZR86_RS14305 at 3184.377 kb on - strand, within ABZR86_RS14305 at 3184.490 kb on + strand, within ABZR86_RS14305 at 3184.491 kb on - strand, within ABZR86_RS14305 at 3184.604 kb on + strand, within ABZR86_RS14305 at 3184.664 kb on + strand, within ABZR86_RS14305 at 3184.664 kb on + strand, within ABZR86_RS14305 at 3184.665 kb on - strand, within ABZR86_RS14305 at 3184.665 kb on - strand, within ABZR86_RS14305 at 3184.665 kb on - strand, within ABZR86_RS14305 at 3184.692 kb on - strand, within ABZR86_RS14305 at 3184.808 kb on + strand, within ABZR86_RS14305 at 3184.809 kb on - strand, within ABZR86_RS14305 at 3184.859 kb on + strand, within ABZR86_RS14305 at 3184.953 kb on - strand, within ABZR86_RS14305 at 3184.961 kb on + strand, within ABZR86_RS14305 at 3184.961 kb on + strand, within ABZR86_RS14305 at 3184.961 kb on + strand, within ABZR86_RS14305 at 3184.962 kb on - strand, within ABZR86_RS14305 at 3184.962 kb on - strand, within ABZR86_RS14305 at 3184.962 kb on - strand, within ABZR86_RS14305 at 3184.973 kb on + strand, within ABZR86_RS14305 at 3184.974 kb on - strand, within ABZR86_RS14305 at 3184.974 kb on - strand, within ABZR86_RS14305 at 3184.974 kb on - strand, within ABZR86_RS14305
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,182,416 + ABZR86_RS14295 0.87 -0.4 3,182,548 + +0.6 3,182,583 + -0.4 3,182,712 - +0.1 3,182,831 - +0.5 3,183,027 + -1.0 3,183,031 + -1.3 3,183,032 - +0.6 3,183,130 - +1.7 3,183,494 + ABZR86_RS14300 0.27 +0.9 3,183,494 + ABZR86_RS14300 0.27 +0.0 3,183,495 - ABZR86_RS14300 0.27 -0.5 3,183,495 - ABZR86_RS14300 0.27 -1.4 3,183,495 - ABZR86_RS14300 0.27 -1.4 3,183,728 + ABZR86_RS14300 0.56 +0.1 3,183,728 + ABZR86_RS14300 0.56 -0.3 3,183,729 - ABZR86_RS14300 0.56 +0.4 3,183,729 - ABZR86_RS14300 0.56 -0.5 3,183,729 - ABZR86_RS14300 0.56 +0.4 3,183,791 + ABZR86_RS14300 0.64 -1.6 3,183,791 + ABZR86_RS14300 0.64 -1.5 3,183,791 + ABZR86_RS14300 0.64 +0.4 3,183,792 - ABZR86_RS14300 0.64 -0.4 3,183,863 + ABZR86_RS14300 0.72 -1.3 3,183,863 + ABZR86_RS14300 0.72 +0.5 3,183,863 + ABZR86_RS14300 0.72 -0.6 3,183,941 + ABZR86_RS14300 0.82 +1.3 3,183,941 + ABZR86_RS14300 0.82 +0.6 3,183,942 - ABZR86_RS14300 0.82 -0.1 3,183,944 + ABZR86_RS14300 0.83 +2.3 3,183,945 - ABZR86_RS14300 0.83 -0.5 3,183,945 - ABZR86_RS14300 0.83 -0.5 3,184,161 + +0.4 3,184,374 - ABZR86_RS14305 0.19 +1.3 3,184,374 - ABZR86_RS14305 0.19 +1.1 3,184,374 - ABZR86_RS14305 0.19 +0.5 3,184,374 - ABZR86_RS14305 0.19 -0.1 3,184,374 - ABZR86_RS14305 0.19 -1.0 3,184,374 - ABZR86_RS14305 0.19 -0.9 3,184,377 - ABZR86_RS14305 0.19 +0.1 3,184,377 - ABZR86_RS14305 0.19 -0.3 3,184,490 + ABZR86_RS14305 0.27 +0.1 3,184,491 - ABZR86_RS14305 0.27 +0.6 3,184,604 + ABZR86_RS14305 0.34 +0.3 3,184,664 + ABZR86_RS14305 0.38 +0.2 3,184,664 + ABZR86_RS14305 0.38 +2.2 3,184,665 - ABZR86_RS14305 0.38 +0.5 3,184,665 - ABZR86_RS14305 0.38 +0.5 3,184,665 - ABZR86_RS14305 0.38 +0.5 3,184,692 - ABZR86_RS14305 0.40 -0.4 3,184,808 + ABZR86_RS14305 0.48 -0.8 3,184,809 - ABZR86_RS14305 0.48 +0.8 3,184,859 + ABZR86_RS14305 0.51 -1.0 3,184,953 - ABZR86_RS14305 0.57 -0.4 3,184,961 + ABZR86_RS14305 0.58 -1.1 3,184,961 + ABZR86_RS14305 0.58 +0.5 3,184,961 + ABZR86_RS14305 0.58 +1.1 3,184,962 - ABZR86_RS14305 0.58 -0.1 3,184,962 - ABZR86_RS14305 0.58 +1.1 3,184,962 - ABZR86_RS14305 0.58 -0.5 3,184,973 + ABZR86_RS14305 0.59 +0.3 3,184,974 - ABZR86_RS14305 0.59 -0.4 3,184,974 - ABZR86_RS14305 0.59 +0.5 3,184,974 - ABZR86_RS14305 0.59 +0.2
Or see this region's nucleotide sequence