Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS11765

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS11760 and ABZR86_RS11765 overlap by 1 nucleotidesABZR86_RS11765 and ABZR86_RS11770 overlap by 1 nucleotidesABZR86_RS11770 and ABZR86_RS11775 overlap by 8 nucleotides ABZR86_RS11760: ABZR86_RS11760 - BatD family protein, at 2,636,830 to 2,638,512 _RS11760 ABZR86_RS11765: ABZR86_RS11765 - VWA domain-containing protein, at 2,638,512 to 2,640,401 _RS11765 ABZR86_RS11770: ABZR86_RS11770 - VWA domain-containing protein, at 2,640,401 to 2,641,387 _RS11770 ABZR86_RS11775: ABZR86_RS11775 - DUF4381 family protein, at 2,641,380 to 2,641,910 _RS11775 Position (kb) 2638 2639 2640 2641Strain fitness (log2 ratio) -2 -1 0 1at 2637.561 kb on - strand, within ABZR86_RS11760at 2637.612 kb on - strand, within ABZR86_RS11760at 2637.906 kb on - strand, within ABZR86_RS11760at 2637.926 kb on + strand, within ABZR86_RS11760at 2637.927 kb on - strand, within ABZR86_RS11760at 2637.927 kb on - strand, within ABZR86_RS11760at 2637.927 kb on - strand, within ABZR86_RS11760at 2637.927 kb on - strand, within ABZR86_RS11760at 2637.954 kb on - strand, within ABZR86_RS11760at 2638.040 kb on + strand, within ABZR86_RS11760at 2638.040 kb on + strand, within ABZR86_RS11760at 2638.040 kb on + strand, within ABZR86_RS11760at 2638.041 kb on - strand, within ABZR86_RS11760at 2638.041 kb on - strand, within ABZR86_RS11760at 2638.076 kb on + strand, within ABZR86_RS11760at 2638.076 kb on + strand, within ABZR86_RS11760at 2638.076 kb on + strand, within ABZR86_RS11760at 2638.076 kb on + strand, within ABZR86_RS11760at 2638.076 kb on + strand, within ABZR86_RS11760at 2638.077 kb on - strand, within ABZR86_RS11760at 2638.077 kb on - strand, within ABZR86_RS11760at 2638.250 kb on + strand, within ABZR86_RS11760at 2638.250 kb on + strand, within ABZR86_RS11760at 2638.250 kb on + strand, within ABZR86_RS11760at 2638.251 kb on - strand, within ABZR86_RS11760at 2638.251 kb on - strand, within ABZR86_RS11760at 2638.389 kb on + strandat 2638.390 kb on - strandat 2638.390 kb on - strandat 2638.390 kb on - strandat 2638.390 kb on - strandat 2638.390 kb on - strandat 2638.390 kb on - strandat 2638.550 kb on - strandat 2639.122 kb on + strand, within ABZR86_RS11765at 2639.179 kb on + strand, within ABZR86_RS11765at 2639.180 kb on - strand, within ABZR86_RS11765at 2639.594 kb on - strand, within ABZR86_RS11765at 2639.594 kb on - strand, within ABZR86_RS11765at 2639.733 kb on + strand, within ABZR86_RS11765at 2639.734 kb on - strand, within ABZR86_RS11765at 2639.986 kb on + strand, within ABZR86_RS11765at 2640.074 kb on + strand, within ABZR86_RS11765at 2640.075 kb on - strand, within ABZR86_RS11765at 2640.137 kb on - strand, within ABZR86_RS11765at 2640.328 kb on + strandat 2640.328 kb on + strandat 2640.723 kb on + strand, within ABZR86_RS11770at 2640.724 kb on - strand, within ABZR86_RS11770at 2640.724 kb on - strand, within ABZR86_RS11770at 2640.945 kb on + strand, within ABZR86_RS11770at 2640.945 kb on + strand, within ABZR86_RS11770at 2640.946 kb on - strand, within ABZR86_RS11770at 2640.946 kb on - strand, within ABZR86_RS11770at 2641.166 kb on + strand, within ABZR86_RS11770at 2641.167 kb on - strand, within ABZR86_RS11770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,637,561 - ABZR86_RS11760 0.43 -0.4
2,637,612 - ABZR86_RS11760 0.46 -2.4
2,637,906 - ABZR86_RS11760 0.64 -0.1
2,637,926 + ABZR86_RS11760 0.65 -0.3
2,637,927 - ABZR86_RS11760 0.65 +0.3
2,637,927 - ABZR86_RS11760 0.65 +0.2
2,637,927 - ABZR86_RS11760 0.65 -0.3
2,637,927 - ABZR86_RS11760 0.65 -0.3
2,637,954 - ABZR86_RS11760 0.67 -0.4
2,638,040 + ABZR86_RS11760 0.72 +0.6
2,638,040 + ABZR86_RS11760 0.72 -0.9
2,638,040 + ABZR86_RS11760 0.72 -0.5
2,638,041 - ABZR86_RS11760 0.72 +0.4
2,638,041 - ABZR86_RS11760 0.72 -0.7
2,638,076 + ABZR86_RS11760 0.74 -0.2
2,638,076 + ABZR86_RS11760 0.74 -0.7
2,638,076 + ABZR86_RS11760 0.74 -0.9
2,638,076 + ABZR86_RS11760 0.74 +0.0
2,638,076 + ABZR86_RS11760 0.74 +0.3
2,638,077 - ABZR86_RS11760 0.74 +0.7
2,638,077 - ABZR86_RS11760 0.74 -0.5
2,638,250 + ABZR86_RS11760 0.84 -0.2
2,638,250 + ABZR86_RS11760 0.84 +0.2
2,638,250 + ABZR86_RS11760 0.84 -0.2
2,638,251 - ABZR86_RS11760 0.84 +0.0
2,638,251 - ABZR86_RS11760 0.84 +0.6
2,638,389 + +0.1
2,638,390 - -0.6
2,638,390 - +0.2
2,638,390 - +0.0
2,638,390 - -0.3
2,638,390 - +0.7
2,638,390 - -0.3
2,638,550 - -0.7
2,639,122 + ABZR86_RS11765 0.32 -0.6
2,639,179 + ABZR86_RS11765 0.35 +0.1
2,639,180 - ABZR86_RS11765 0.35 -1.1
2,639,594 - ABZR86_RS11765 0.57 -1.7
2,639,594 - ABZR86_RS11765 0.57 +0.8
2,639,733 + ABZR86_RS11765 0.65 -0.7
2,639,734 - ABZR86_RS11765 0.65 -0.6
2,639,986 + ABZR86_RS11765 0.78 -2.4
2,640,074 + ABZR86_RS11765 0.83 +0.1
2,640,075 - ABZR86_RS11765 0.83 -1.5
2,640,137 - ABZR86_RS11765 0.86 -1.2
2,640,328 + +0.3
2,640,328 + +0.8
2,640,723 + ABZR86_RS11770 0.33 -0.8
2,640,724 - ABZR86_RS11770 0.33 -0.0
2,640,724 - ABZR86_RS11770 0.33 +1.4
2,640,945 + ABZR86_RS11770 0.55 +0.9
2,640,945 + ABZR86_RS11770 0.55 +0.4
2,640,946 - ABZR86_RS11770 0.55 -0.1
2,640,946 - ABZR86_RS11770 0.55 -0.7
2,641,166 + ABZR86_RS11770 0.78 -0.9
2,641,167 - ABZR86_RS11770 0.78 -0.1

Or see this region's nucleotide sequence