Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09770 and ABZR86_RS09775 are separated by 50 nucleotides ABZR86_RS09775 and ABZR86_RS09780 are separated by 68 nucleotides ABZR86_RS09780 and ABZR86_RS09785 are separated by 444 nucleotides
ABZR86_RS09770: ABZR86_RS09770 - IS30 family transposase, at 2,170,719 to 2,171,875
_RS09770
ABZR86_RS09775: ABZR86_RS09775 - hypothetical protein, at 2,171,926 to 2,172,243
_RS09775
ABZR86_RS09780: ABZR86_RS09780 - hypothetical protein, at 2,172,312 to 2,172,749
_RS09780
ABZR86_RS09785: ABZR86_RS09785 - alpha/beta hydrolase, at 2,173,194 to 2,174,273
_RS09785
Position (kb)
2172
2173 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2171.925 kb on + strand at 2171.926 kb on - strand at 2171.977 kb on + strand, within ABZR86_RS09775 at 2171.977 kb on + strand, within ABZR86_RS09775 at 2171.978 kb on - strand, within ABZR86_RS09775 at 2172.045 kb on + strand, within ABZR86_RS09775 at 2172.046 kb on - strand, within ABZR86_RS09775 at 2172.071 kb on + strand, within ABZR86_RS09775 at 2172.072 kb on - strand, within ABZR86_RS09775 at 2172.072 kb on - strand, within ABZR86_RS09775 at 2172.072 kb on - strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.186 kb on + strand, within ABZR86_RS09775 at 2172.187 kb on - strand, within ABZR86_RS09775 at 2172.187 kb on - strand, within ABZR86_RS09775 at 2172.187 kb on - strand, within ABZR86_RS09775 at 2172.187 kb on - strand, within ABZR86_RS09775 at 2172.190 kb on + strand, within ABZR86_RS09775 at 2172.224 kb on + strand at 2172.225 kb on - strand at 2172.225 kb on - strand at 2172.241 kb on + strand at 2172.241 kb on + strand at 2172.241 kb on + strand at 2172.242 kb on - strand at 2172.254 kb on + strand at 2172.255 kb on - strand at 2172.341 kb on + strand at 2172.342 kb on - strand at 2172.342 kb on - strand at 2172.342 kb on - strand at 2172.479 kb on - strand, within ABZR86_RS09780 at 2172.479 kb on - strand, within ABZR86_RS09780 at 2172.479 kb on - strand, within ABZR86_RS09780 at 2172.479 kb on - strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.537 kb on + strand, within ABZR86_RS09780 at 2172.538 kb on - strand, within ABZR86_RS09780 at 2172.538 kb on - strand, within ABZR86_RS09780 at 2172.596 kb on - strand, within ABZR86_RS09780 at 2172.596 kb on - strand, within ABZR86_RS09780 at 2172.596 kb on - strand, within ABZR86_RS09780 at 2172.596 kb on - strand, within ABZR86_RS09780 at 2172.598 kb on + strand, within ABZR86_RS09780 at 2172.599 kb on - strand, within ABZR86_RS09780 at 2172.633 kb on + strand, within ABZR86_RS09780 at 2172.633 kb on + strand, within ABZR86_RS09780 at 2172.633 kb on + strand, within ABZR86_RS09780 at 2172.634 kb on - strand, within ABZR86_RS09780 at 2172.634 kb on - strand, within ABZR86_RS09780 at 2172.718 kb on + strand at 2172.718 kb on + strand at 2172.747 kb on + strand at 2172.747 kb on + strand at 2172.748 kb on - strand at 2172.787 kb on + strand at 2172.787 kb on + strand at 2172.787 kb on + strand at 2172.787 kb on + strand at 2172.787 kb on + strand at 2172.788 kb on - strand at 2172.788 kb on - strand at 2172.798 kb on - strand at 2172.812 kb on + strand at 2172.837 kb on + strand at 2172.838 kb on - strand at 2172.898 kb on + strand at 2172.898 kb on + strand at 2172.899 kb on - strand at 2172.918 kb on + strand at 2172.919 kb on - strand at 2172.919 kb on - strand at 2172.919 kb on - strand at 2172.953 kb on - strand at 2173.027 kb on + strand at 2173.107 kb on + strand at 2173.143 kb on + strand at 2173.178 kb on + strand at 2173.178 kb on + strand at 2173.178 kb on + strand at 2173.179 kb on - strand at 2173.196 kb on - strand at 2173.199 kb on + strand at 2173.200 kb on - strand at 2173.327 kb on + strand, within ABZR86_RS09785 at 2173.327 kb on + strand, within ABZR86_RS09785 at 2173.327 kb on + strand, within ABZR86_RS09785 at 2173.331 kb on - strand, within ABZR86_RS09785 at 2173.477 kb on + strand, within ABZR86_RS09785 at 2173.478 kb on - strand, within ABZR86_RS09785 at 2173.478 kb on - strand, within ABZR86_RS09785 at 2173.478 kb on - strand, within ABZR86_RS09785 at 2173.495 kb on + strand, within ABZR86_RS09785 at 2173.496 kb on - strand, within ABZR86_RS09785 at 2173.511 kb on + strand, within ABZR86_RS09785 at 2173.512 kb on - strand, within ABZR86_RS09785 at 2173.522 kb on + strand, within ABZR86_RS09785 at 2173.522 kb on + strand, within ABZR86_RS09785 at 2173.523 kb on - strand, within ABZR86_RS09785 at 2173.523 kb on - strand, within ABZR86_RS09785 at 2173.523 kb on - strand, within ABZR86_RS09785 at 2173.523 kb on - strand, within ABZR86_RS09785 at 2173.523 kb on - strand, within ABZR86_RS09785 at 2173.577 kb on - strand, within ABZR86_RS09785 at 2173.577 kb on - strand, within ABZR86_RS09785 at 2173.577 kb on - strand, within ABZR86_RS09785 at 2173.580 kb on + strand, within ABZR86_RS09785 at 2173.580 kb on + strand, within ABZR86_RS09785 at 2173.580 kb on + strand, within ABZR86_RS09785 at 2173.581 kb on - strand, within ABZR86_RS09785 at 2173.581 kb on - strand, within ABZR86_RS09785 at 2173.581 kb on - strand, within ABZR86_RS09785 at 2173.581 kb on - strand, within ABZR86_RS09785 at 2173.581 kb on - strand, within ABZR86_RS09785 at 2173.676 kb on + strand, within ABZR86_RS09785 at 2173.705 kb on + strand, within ABZR86_RS09785 at 2173.705 kb on + strand, within ABZR86_RS09785 at 2173.705 kb on + strand, within ABZR86_RS09785 at 2173.705 kb on + strand, within ABZR86_RS09785 at 2173.706 kb on - strand, within ABZR86_RS09785 at 2173.748 kb on + strand, within ABZR86_RS09785 at 2173.748 kb on + strand, within ABZR86_RS09785 at 2173.748 kb on + strand, within ABZR86_RS09785 at 2173.749 kb on - strand, within ABZR86_RS09785 at 2173.749 kb on - strand, within ABZR86_RS09785 at 2173.749 kb on - strand, within ABZR86_RS09785
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,171,925 + -0.2 2,171,926 - +0.7 2,171,977 + ABZR86_RS09775 0.16 -0.1 2,171,977 + ABZR86_RS09775 0.16 -0.0 2,171,978 - ABZR86_RS09775 0.16 +0.5 2,172,045 + ABZR86_RS09775 0.37 +0.4 2,172,046 - ABZR86_RS09775 0.38 -0.9 2,172,071 + ABZR86_RS09775 0.46 +0.8 2,172,072 - ABZR86_RS09775 0.46 -0.4 2,172,072 - ABZR86_RS09775 0.46 +0.4 2,172,072 - ABZR86_RS09775 0.46 -0.0 2,172,186 + ABZR86_RS09775 0.82 -0.3 2,172,186 + ABZR86_RS09775 0.82 +0.4 2,172,186 + ABZR86_RS09775 0.82 -0.3 2,172,186 + ABZR86_RS09775 0.82 +0.3 2,172,186 + ABZR86_RS09775 0.82 -0.0 2,172,186 + ABZR86_RS09775 0.82 +0.3 2,172,186 + ABZR86_RS09775 0.82 +0.3 2,172,187 - ABZR86_RS09775 0.82 +1.1 2,172,187 - ABZR86_RS09775 0.82 -0.4 2,172,187 - ABZR86_RS09775 0.82 +0.3 2,172,187 - ABZR86_RS09775 0.82 +0.7 2,172,190 + ABZR86_RS09775 0.83 -0.2 2,172,224 + -0.2 2,172,225 - +0.1 2,172,225 - -0.8 2,172,241 + -1.9 2,172,241 + -0.6 2,172,241 + -0.4 2,172,242 - +1.0 2,172,254 + +0.5 2,172,255 - +0.1 2,172,341 + -0.5 2,172,342 - +0.4 2,172,342 - +0.4 2,172,342 - -0.7 2,172,479 - ABZR86_RS09780 0.38 -0.7 2,172,479 - ABZR86_RS09780 0.38 -0.3 2,172,479 - ABZR86_RS09780 0.38 +0.9 2,172,479 - ABZR86_RS09780 0.38 +0.3 2,172,537 + ABZR86_RS09780 0.51 -1.8 2,172,537 + ABZR86_RS09780 0.51 +0.5 2,172,537 + ABZR86_RS09780 0.51 +0.5 2,172,537 + ABZR86_RS09780 0.51 -0.3 2,172,537 + ABZR86_RS09780 0.51 -0.2 2,172,537 + ABZR86_RS09780 0.51 -0.8 2,172,537 + ABZR86_RS09780 0.51 -0.4 2,172,537 + ABZR86_RS09780 0.51 -0.9 2,172,538 - ABZR86_RS09780 0.52 -0.7 2,172,538 - ABZR86_RS09780 0.52 +0.5 2,172,596 - ABZR86_RS09780 0.65 +0.3 2,172,596 - ABZR86_RS09780 0.65 +0.0 2,172,596 - ABZR86_RS09780 0.65 -0.3 2,172,596 - ABZR86_RS09780 0.65 -0.8 2,172,598 + ABZR86_RS09780 0.65 +0.0 2,172,599 - ABZR86_RS09780 0.66 -0.3 2,172,633 + ABZR86_RS09780 0.73 +1.6 2,172,633 + ABZR86_RS09780 0.73 +0.1 2,172,633 + ABZR86_RS09780 0.73 +0.8 2,172,634 - ABZR86_RS09780 0.74 +0.7 2,172,634 - ABZR86_RS09780 0.74 +0.5 2,172,718 + +0.6 2,172,718 + -0.2 2,172,747 + -0.1 2,172,747 + -1.1 2,172,748 - +0.6 2,172,787 + -2.7 2,172,787 + +0.3 2,172,787 + +0.5 2,172,787 + +0.5 2,172,787 + +0.3 2,172,788 - -0.0 2,172,788 - -0.5 2,172,798 - +0.2 2,172,812 + +1.2 2,172,837 + +0.9 2,172,838 - +0.1 2,172,898 + +1.1 2,172,898 + -1.8 2,172,899 - +0.1 2,172,918 + -0.9 2,172,919 - -0.7 2,172,919 - +0.7 2,172,919 - +0.4 2,172,953 - -0.7 2,173,027 + -0.1 2,173,107 + +0.2 2,173,143 + -1.4 2,173,178 + -0.1 2,173,178 + -0.5 2,173,178 + +0.8 2,173,179 - +0.6 2,173,196 - +0.9 2,173,199 + +0.1 2,173,200 - +1.5 2,173,327 + ABZR86_RS09785 0.12 -0.9 2,173,327 + ABZR86_RS09785 0.12 -0.5 2,173,327 + ABZR86_RS09785 0.12 -0.9 2,173,331 - ABZR86_RS09785 0.13 +1.2 2,173,477 + ABZR86_RS09785 0.26 +1.2 2,173,478 - ABZR86_RS09785 0.26 -0.1 2,173,478 - ABZR86_RS09785 0.26 -0.1 2,173,478 - ABZR86_RS09785 0.26 +0.3 2,173,495 + ABZR86_RS09785 0.28 +0.3 2,173,496 - ABZR86_RS09785 0.28 -0.5 2,173,511 + ABZR86_RS09785 0.29 -0.5 2,173,512 - ABZR86_RS09785 0.29 +0.3 2,173,522 + ABZR86_RS09785 0.30 -1.5 2,173,522 + ABZR86_RS09785 0.30 -0.0 2,173,523 - ABZR86_RS09785 0.30 +0.5 2,173,523 - ABZR86_RS09785 0.30 +0.2 2,173,523 - ABZR86_RS09785 0.30 -0.3 2,173,523 - ABZR86_RS09785 0.30 +0.5 2,173,523 - ABZR86_RS09785 0.30 -1.3 2,173,577 - ABZR86_RS09785 0.35 +0.4 2,173,577 - ABZR86_RS09785 0.35 -0.2 2,173,577 - ABZR86_RS09785 0.35 +0.6 2,173,580 + ABZR86_RS09785 0.36 +0.2 2,173,580 + ABZR86_RS09785 0.36 +0.3 2,173,580 + ABZR86_RS09785 0.36 +0.0 2,173,581 - ABZR86_RS09785 0.36 +0.3 2,173,581 - ABZR86_RS09785 0.36 +0.0 2,173,581 - ABZR86_RS09785 0.36 +0.3 2,173,581 - ABZR86_RS09785 0.36 +0.2 2,173,581 - ABZR86_RS09785 0.36 +0.1 2,173,676 + ABZR86_RS09785 0.45 +0.5 2,173,705 + ABZR86_RS09785 0.47 -0.5 2,173,705 + ABZR86_RS09785 0.47 -0.3 2,173,705 + ABZR86_RS09785 0.47 +0.5 2,173,705 + ABZR86_RS09785 0.47 -0.2 2,173,706 - ABZR86_RS09785 0.47 -0.4 2,173,748 + ABZR86_RS09785 0.51 +0.6 2,173,748 + ABZR86_RS09785 0.51 +0.5 2,173,748 + ABZR86_RS09785 0.51 -0.8 2,173,749 - ABZR86_RS09785 0.51 +2.8 2,173,749 - ABZR86_RS09785 0.51 +1.0 2,173,749 - ABZR86_RS09785 0.51 +0.2
Or see this region's nucleotide sequence