Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS08870

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS08860 and ABZR86_RS08865 are separated by 157 nucleotidesABZR86_RS08865 and ABZR86_RS08870 are separated by 14 nucleotidesABZR86_RS08870 and ABZR86_RS08875 are separated by 303 nucleotidesABZR86_RS08875 and ABZR86_RS08880 are separated by 165 nucleotides ABZR86_RS08860: ABZR86_RS08860 - 50S ribosomal protein L9, at 1,980,518 to 1,980,967 _RS08860 ABZR86_RS08865: ABZR86_RS08865 - 30S ribosomal protein S18, at 1,981,125 to 1,981,355 _RS08865 ABZR86_RS08870: ABZR86_RS08870 - 30S ribosomal protein S6, at 1,981,370 to 1,981,810 _RS08870 ABZR86_RS08875: ABZR86_RS08875 - iron-sulfur cluster assembly accessory protein, at 1,982,114 to 1,982,440 _RS08875 ABZR86_RS08880: ABZR86_RS08880 - asparagine--tRNA ligase, at 1,982,606 to 1,984,006 _RS08880 Position (kb) 1981 1982Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1980.371 kb on + strandat 1980.371 kb on + strandat 1980.372 kb on - strandat 1980.372 kb on - strandat 1980.402 kb on - strandat 1980.402 kb on - strandat 1980.402 kb on - strandat 1980.402 kb on - strandat 1980.402 kb on - strandat 1980.414 kb on - strandat 1980.435 kb on - strandat 1980.463 kb on + strandat 1980.463 kb on + strandat 1980.463 kb on + strandat 1980.464 kb on - strandat 1980.519 kb on + strandat 1980.520 kb on - strandat 1980.520 kb on - strandat 1980.699 kb on + strand, within ABZR86_RS08860at 1980.699 kb on + strand, within ABZR86_RS08860at 1980.699 kb on + strand, within ABZR86_RS08860at 1980.699 kb on + strand, within ABZR86_RS08860at 1980.699 kb on + strand, within ABZR86_RS08860at 1980.700 kb on - strand, within ABZR86_RS08860at 1980.700 kb on - strand, within ABZR86_RS08860at 1980.808 kb on - strand, within ABZR86_RS08860at 1980.886 kb on + strand, within ABZR86_RS08860at 1980.886 kb on + strand, within ABZR86_RS08860at 1980.886 kb on + strand, within ABZR86_RS08860at 1981.045 kb on + strandat 1981.046 kb on - strandat 1981.046 kb on - strandat 1981.046 kb on - strandat 1981.046 kb on - strandat 1981.046 kb on - strandat 1981.046 kb on - strandat 1981.046 kb on - strandat 1981.046 kb on - strandat 1981.089 kb on + strandat 1981.089 kb on + strandat 1981.089 kb on + strandat 1981.089 kb on + strandat 1981.090 kb on - strandat 1981.090 kb on - strandat 1981.090 kb on - strandat 1981.090 kb on - strandat 1981.090 kb on - strandat 1981.097 kb on - strandat 1981.103 kb on + strandat 1981.104 kb on - strandat 1981.104 kb on - strandat 1981.147 kb on + strandat 1981.147 kb on + strandat 1981.147 kb on + strandat 1981.148 kb on - strand, within ABZR86_RS08865at 1981.924 kb on - strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.110 kb on + strandat 1982.112 kb on + strandat 1982.113 kb on - strandat 1982.113 kb on - strandat 1982.440 kb on + strandat 1982.440 kb on + strandat 1982.440 kb on + strandat 1982.495 kb on + strandat 1982.495 kb on + strandat 1982.495 kb on + strandat 1982.496 kb on - strandat 1982.496 kb on - strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.500 kb on + strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.501 kb on - strandat 1982.556 kb on + strandat 1982.557 kb on - strandat 1982.557 kb on - strandat 1982.557 kb on - strandat 1982.557 kb on - strandat 1982.558 kb on + strandat 1982.558 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strandat 1982.565 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,980,371 + +0.5
1,980,371 + -0.0
1,980,372 - +1.9
1,980,372 - -0.8
1,980,402 - +0.1
1,980,402 - -0.6
1,980,402 - -0.4
1,980,402 - -0.1
1,980,402 - +0.4
1,980,414 - +1.6
1,980,435 - +0.2
1,980,463 + -0.8
1,980,463 + +0.5
1,980,463 + -0.1
1,980,464 - -1.2
1,980,519 + -0.8
1,980,520 - -3.4
1,980,520 - -0.3
1,980,699 + ABZR86_RS08860 0.40 -0.5
1,980,699 + ABZR86_RS08860 0.40 -1.0
1,980,699 + ABZR86_RS08860 0.40 +0.3
1,980,699 + ABZR86_RS08860 0.40 +1.1
1,980,699 + ABZR86_RS08860 0.40 -0.0
1,980,700 - ABZR86_RS08860 0.40 -0.1
1,980,700 - ABZR86_RS08860 0.40 +0.3
1,980,808 - ABZR86_RS08860 0.64 -0.1
1,980,886 + ABZR86_RS08860 0.82 +2.3
1,980,886 + ABZR86_RS08860 0.82 -1.3
1,980,886 + ABZR86_RS08860 0.82 -0.6
1,981,045 + -3.1
1,981,046 - -1.4
1,981,046 - +1.3
1,981,046 - -1.4
1,981,046 - +0.1
1,981,046 - -2.5
1,981,046 - -1.2
1,981,046 - -1.5
1,981,046 - -0.3
1,981,089 + -0.5
1,981,089 + -1.1
1,981,089 + -1.9
1,981,089 + -1.5
1,981,090 - -0.5
1,981,090 - +0.8
1,981,090 - -0.3
1,981,090 - -2.2
1,981,090 - -1.7
1,981,097 - +0.1
1,981,103 + -0.4
1,981,104 - +0.7
1,981,104 - -0.3
1,981,147 + -1.1
1,981,147 + +2.0
1,981,147 + -0.9
1,981,148 - ABZR86_RS08865 0.10 -1.3
1,981,924 - -0.1
1,982,110 + -0.7
1,982,110 + +0.8
1,982,110 + -0.2
1,982,110 + -1.2
1,982,110 + +0.1
1,982,110 + -1.6
1,982,110 + +0.2
1,982,110 + -0.2
1,982,110 + -0.8
1,982,112 + -0.3
1,982,113 - +1.0
1,982,113 - +0.9
1,982,440 + +0.3
1,982,440 + +0.2
1,982,440 + -0.6
1,982,495 + +0.0
1,982,495 + +1.3
1,982,495 + -0.4
1,982,496 - +0.6
1,982,496 - -0.0
1,982,500 + +0.5
1,982,500 + +0.8
1,982,500 + -0.9
1,982,500 + -0.3
1,982,500 + -0.2
1,982,500 + -1.1
1,982,500 + -0.4
1,982,501 - -0.4
1,982,501 - -0.1
1,982,501 - -0.2
1,982,501 - +0.3
1,982,501 - +0.5
1,982,501 - +0.1
1,982,556 + -0.1
1,982,557 - -1.8
1,982,557 - +0.0
1,982,557 - -3.5
1,982,557 - -3.5
1,982,558 + +0.1
1,982,558 + -0.7
1,982,565 + +0.4
1,982,565 + +1.5
1,982,565 + +0.1
1,982,565 + -0.6
1,982,565 + -0.3
1,982,565 + -0.2
1,982,565 + +0.3
1,982,565 + +0.2
1,982,565 + -0.5

Or see this region's nucleotide sequence