Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08240 and ABZR86_RS08245 overlap by 8 nucleotides ABZR86_RS08245 and ABZR86_RS08250 are separated by 49 nucleotides ABZR86_RS08250 and ABZR86_RS08255 are separated by 125 nucleotides ABZR86_RS08255 and ABZR86_RS08260 are separated by 176 nucleotides ABZR86_RS08260 and ABZR86_RS08265 overlap by 4 nucleotides
ABZR86_RS08240: ABZR86_RS08240 - phosphate ABC transporter permease PstA, at 1,834,485 to 1,835,357
_RS08240
ABZR86_RS08245: ABZR86_RS08245 - phosphate ABC transporter ATP-binding protein PstB, at 1,835,350 to 1,836,156
_RS08245
ABZR86_RS08250: ABZR86_RS08250 - phosphate signaling complex protein PhoU, at 1,836,206 to 1,836,940
_RS08250
ABZR86_RS08255: ABZR86_RS08255 - quaternary ammonium compound efflux SMR transporter SugE, at 1,837,066 to 1,837,389
_RS08255
ABZR86_RS08260: ABZR86_RS08260 - hypothetical protein, at 1,837,566 to 1,837,847
_RS08260
ABZR86_RS08265: ABZR86_RS08265 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB, at 1,837,844 to 1,838,590
_RS08265
Position (kb)
1836
1837 Strain fitness (log2 ratio)
-2
-1
0
1 at 1836.206 kb on - strand at 1836.206 kb on - strand at 1836.206 kb on - strand at 1836.242 kb on + strand at 1836.242 kb on + strand at 1836.243 kb on - strand at 1836.243 kb on - strand at 1836.665 kb on + strand, within ABZR86_RS08250 at 1836.704 kb on + strand, within ABZR86_RS08250 at 1836.734 kb on + strand, within ABZR86_RS08250 at 1836.735 kb on - strand, within ABZR86_RS08250 at 1836.994 kb on - strand at 1836.994 kb on - strand at 1837.325 kb on + strand, within ABZR86_RS08255 at 1837.325 kb on + strand, within ABZR86_RS08255 at 1837.325 kb on + strand, within ABZR86_RS08255 at 1837.326 kb on - strand, within ABZR86_RS08255 at 1837.376 kb on + strand at 1837.376 kb on + strand at 1837.376 kb on + strand at 1837.376 kb on + strand at 1837.377 kb on - strand at 1837.377 kb on - strand at 1837.377 kb on - strand at 1837.479 kb on + strand at 1837.479 kb on + strand at 1837.480 kb on - strand at 1837.531 kb on + strand at 1837.531 kb on + strand at 1837.532 kb on - strand at 1837.532 kb on - strand at 1837.532 kb on - strand at 1837.532 kb on - strand at 1837.532 kb on - strand at 1837.631 kb on - strand, within ABZR86_RS08260 at 1837.631 kb on - strand, within ABZR86_RS08260 at 1837.631 kb on - strand, within ABZR86_RS08260 at 1837.631 kb on - strand, within ABZR86_RS08260 at 1837.631 kb on - strand, within ABZR86_RS08260 at 1837.741 kb on + strand, within ABZR86_RS08260 at 1837.742 kb on - strand, within ABZR86_RS08260 at 1837.841 kb on + strand at 1837.842 kb on - strand at 1837.842 kb on - strand at 1837.842 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,836,206 - +0.2 1,836,206 - -0.9 1,836,206 - -0.3 1,836,242 + -0.6 1,836,242 + -0.9 1,836,243 - +0.3 1,836,243 - -2.2 1,836,665 + ABZR86_RS08250 0.62 -0.1 1,836,704 + ABZR86_RS08250 0.68 -2.2 1,836,734 + ABZR86_RS08250 0.72 -2.2 1,836,735 - ABZR86_RS08250 0.72 +1.0 1,836,994 - -0.2 1,836,994 - +0.7 1,837,325 + ABZR86_RS08255 0.80 -0.3 1,837,325 + ABZR86_RS08255 0.80 -0.6 1,837,325 + ABZR86_RS08255 0.80 -0.7 1,837,326 - ABZR86_RS08255 0.80 +0.3 1,837,376 + +0.2 1,837,376 + +0.2 1,837,376 + -0.6 1,837,376 + +0.1 1,837,377 - +0.8 1,837,377 - -0.2 1,837,377 - +0.3 1,837,479 + -0.8 1,837,479 + +0.3 1,837,480 - -2.0 1,837,531 + -0.6 1,837,531 + -0.2 1,837,532 - +0.7 1,837,532 - +0.2 1,837,532 - -0.0 1,837,532 - -0.2 1,837,532 - -1.2 1,837,631 - ABZR86_RS08260 0.23 +1.0 1,837,631 - ABZR86_RS08260 0.23 +0.7 1,837,631 - ABZR86_RS08260 0.23 -0.2 1,837,631 - ABZR86_RS08260 0.23 -0.3 1,837,631 - ABZR86_RS08260 0.23 -0.1 1,837,741 + ABZR86_RS08260 0.62 +0.1 1,837,742 - ABZR86_RS08260 0.62 -0.4 1,837,841 + +0.1 1,837,842 - +0.3 1,837,842 - -0.6 1,837,842 - -0.1
Or see this region's nucleotide sequence