Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05345

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05335 and ABZR86_RS05340 are separated by 195 nucleotidesABZR86_RS05340 and ABZR86_RS05345 overlap by 4 nucleotidesABZR86_RS05345 and ABZR86_RS05350 are separated by 166 nucleotides ABZR86_RS05335: ABZR86_RS05335 - hemerythrin domain-containing protein, at 1,200,024 to 1,200,515 _RS05335 ABZR86_RS05340: ABZR86_RS05340 - HAD family hydrolase, at 1,200,711 to 1,201,427 _RS05340 ABZR86_RS05345: ABZR86_RS05345 - NAD-dependent protein deacetylase, at 1,201,424 to 1,202,266 _RS05345 ABZR86_RS05350: ABZR86_RS05350 - CHAD domain-containing protein, at 1,202,433 to 1,203,344 _RS05350 Position (kb) 1201 1202 1203Strain fitness (log2 ratio) -2 -1 0 1 2at 1200.755 kb on + strandat 1200.756 kb on - strandat 1200.765 kb on + strandat 1200.766 kb on - strandat 1200.766 kb on - strandat 1200.766 kb on - strandat 1200.769 kb on - strandat 1200.810 kb on + strand, within ABZR86_RS05340at 1201.180 kb on - strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.290 kb on + strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.291 kb on - strand, within ABZR86_RS05340at 1201.300 kb on - strand, within ABZR86_RS05340at 1201.415 kb on + strandat 1201.416 kb on - strandat 1201.416 kb on - strandat 1201.416 kb on - strandat 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.601 kb on + strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.602 kb on - strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.737 kb on + strand, within ABZR86_RS05345at 1201.738 kb on - strand, within ABZR86_RS05345at 1201.738 kb on - strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.920 kb on + strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1201.921 kb on - strand, within ABZR86_RS05345at 1202.185 kb on + strandat 1202.186 kb on - strandat 1202.258 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.295 kb on - strandat 1202.302 kb on + strandat 1202.302 kb on + strandat 1202.532 kb on + strand, within ABZR86_RS05350at 1202.532 kb on + strand, within ABZR86_RS05350at 1202.586 kb on + strand, within ABZR86_RS05350at 1202.586 kb on + strand, within ABZR86_RS05350at 1202.586 kb on + strand, within ABZR86_RS05350at 1202.586 kb on + strand, within ABZR86_RS05350at 1202.717 kb on + strand, within ABZR86_RS05350at 1202.717 kb on + strand, within ABZR86_RS05350at 1202.717 kb on + strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1202.718 kb on - strand, within ABZR86_RS05350at 1203.075 kb on + strand, within ABZR86_RS05350at 1203.076 kb on - strand, within ABZR86_RS05350at 1203.076 kb on - strand, within ABZR86_RS05350at 1203.196 kb on + strand, within ABZR86_RS05350at 1203.196 kb on + strand, within ABZR86_RS05350at 1203.197 kb on - strand, within ABZR86_RS05350at 1203.197 kb on - strand, within ABZR86_RS05350at 1203.197 kb on - strand, within ABZR86_RS05350

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,200,755 + +1.4
1,200,756 - +0.3
1,200,765 + +0.1
1,200,766 - -0.8
1,200,766 - -0.2
1,200,766 - -0.7
1,200,769 - -1.1
1,200,810 + ABZR86_RS05340 0.14 -1.0
1,201,180 - ABZR86_RS05340 0.65 -2.1
1,201,290 + ABZR86_RS05340 0.81 +0.5
1,201,290 + ABZR86_RS05340 0.81 +0.5
1,201,290 + ABZR86_RS05340 0.81 +0.5
1,201,290 + ABZR86_RS05340 0.81 -0.0
1,201,290 + ABZR86_RS05340 0.81 +0.4
1,201,290 + ABZR86_RS05340 0.81 -1.3
1,201,290 + ABZR86_RS05340 0.81 -0.1
1,201,290 + ABZR86_RS05340 0.81 +2.3
1,201,290 + ABZR86_RS05340 0.81 +0.6
1,201,291 - ABZR86_RS05340 0.81 -0.1
1,201,291 - ABZR86_RS05340 0.81 -0.9
1,201,291 - ABZR86_RS05340 0.81 -0.4
1,201,291 - ABZR86_RS05340 0.81 -1.4
1,201,291 - ABZR86_RS05340 0.81 +0.8
1,201,291 - ABZR86_RS05340 0.81 -0.1
1,201,291 - ABZR86_RS05340 0.81 +0.6
1,201,291 - ABZR86_RS05340 0.81 -0.1
1,201,291 - ABZR86_RS05340 0.81 +0.1
1,201,300 - ABZR86_RS05340 0.82 +0.5
1,201,415 + -1.4
1,201,416 - +0.7
1,201,416 - -1.3
1,201,416 - -0.1
1,201,601 + ABZR86_RS05345 0.21 +0.8
1,201,601 + ABZR86_RS05345 0.21 -1.1
1,201,601 + ABZR86_RS05345 0.21 +0.6
1,201,601 + ABZR86_RS05345 0.21 +0.2
1,201,601 + ABZR86_RS05345 0.21 +0.3
1,201,602 - ABZR86_RS05345 0.21 -0.2
1,201,602 - ABZR86_RS05345 0.21 +0.2
1,201,602 - ABZR86_RS05345 0.21 -0.2
1,201,602 - ABZR86_RS05345 0.21 +0.4
1,201,602 - ABZR86_RS05345 0.21 +0.4
1,201,737 + ABZR86_RS05345 0.37 +0.1
1,201,737 + ABZR86_RS05345 0.37 +1.2
1,201,737 + ABZR86_RS05345 0.37 -1.1
1,201,737 + ABZR86_RS05345 0.37 -0.6
1,201,737 + ABZR86_RS05345 0.37 +0.3
1,201,738 - ABZR86_RS05345 0.37 +1.5
1,201,738 - ABZR86_RS05345 0.37 -0.4
1,201,920 + ABZR86_RS05345 0.59 -0.2
1,201,920 + ABZR86_RS05345 0.59 -0.1
1,201,920 + ABZR86_RS05345 0.59 +0.7
1,201,920 + ABZR86_RS05345 0.59 -0.1
1,201,921 - ABZR86_RS05345 0.59 +0.1
1,201,921 - ABZR86_RS05345 0.59 +1.0
1,201,921 - ABZR86_RS05345 0.59 -1.3
1,201,921 - ABZR86_RS05345 0.59 +0.3
1,202,185 + +0.2
1,202,186 - -0.2
1,202,258 - +1.0
1,202,295 - -0.3
1,202,295 - +0.3
1,202,295 - -1.2
1,202,295 - -0.7
1,202,302 + -2.0
1,202,302 + +0.8
1,202,532 + ABZR86_RS05350 0.11 +0.7
1,202,532 + ABZR86_RS05350 0.11 -0.2
1,202,586 + ABZR86_RS05350 0.17 +0.7
1,202,586 + ABZR86_RS05350 0.17 -0.5
1,202,586 + ABZR86_RS05350 0.17 +0.2
1,202,586 + ABZR86_RS05350 0.17 +0.9
1,202,717 + ABZR86_RS05350 0.31 +0.2
1,202,717 + ABZR86_RS05350 0.31 -0.3
1,202,717 + ABZR86_RS05350 0.31 +0.2
1,202,718 - ABZR86_RS05350 0.31 -1.0
1,202,718 - ABZR86_RS05350 0.31 -0.3
1,202,718 - ABZR86_RS05350 0.31 +0.1
1,202,718 - ABZR86_RS05350 0.31 -0.3
1,202,718 - ABZR86_RS05350 0.31 -0.2
1,203,075 + ABZR86_RS05350 0.70 -2.1
1,203,076 - ABZR86_RS05350 0.71 +0.2
1,203,076 - ABZR86_RS05350 0.71 -0.3
1,203,196 + ABZR86_RS05350 0.84 -0.3
1,203,196 + ABZR86_RS05350 0.84 -1.2
1,203,197 - ABZR86_RS05350 0.84 -2.5
1,203,197 - ABZR86_RS05350 0.84 +0.3
1,203,197 - ABZR86_RS05350 0.84 -0.2

Or see this region's nucleotide sequence