Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05315 and ABZR86_RS05320 are separated by 207 nucleotides ABZR86_RS05320 and ABZR86_RS05325 are separated by 24 nucleotides ABZR86_RS05325 and ABZR86_RS05330 overlap by 4 nucleotides ABZR86_RS05330 and ABZR86_RS05335 are separated by 275 nucleotides ABZR86_RS05335 and ABZR86_RS05340 are separated by 195 nucleotides
ABZR86_RS05315: ABZR86_RS05315 - alpha/beta fold hydrolase, at 1,195,889 to 1,197,178
_RS05315
ABZR86_RS05320: ABZR86_RS05320 - hypothetical protein, at 1,197,386 to 1,197,574
_RS05320
ABZR86_RS05325: ABZR86_RS05325 - ferritin-like domain-containing protein, at 1,197,599 to 1,198,108
_RS05325
ABZR86_RS05330: ABZR86_RS05330 - AarF/UbiB family protein, at 1,198,105 to 1,199,748
_RS05330
ABZR86_RS05335: ABZR86_RS05335 - hemerythrin domain-containing protein, at 1,200,024 to 1,200,515
_RS05335
ABZR86_RS05340: ABZR86_RS05340 - HAD family hydrolase, at 1,200,711 to 1,201,427
_RS05340
Position (kb) 1198
1199
1200 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1197.604 kb on + strand at 1197.704 kb on + strand, within ABZR86_RS05325 at 1197.705 kb on - strand, within ABZR86_RS05325 at 1197.902 kb on + strand, within ABZR86_RS05325 at 1197.903 kb on - strand, within ABZR86_RS05325 at 1197.903 kb on - strand, within ABZR86_RS05325 at 1197.978 kb on + strand, within ABZR86_RS05325 at 1197.978 kb on + strand, within ABZR86_RS05325 at 1198.064 kb on + strand at 1198.065 kb on - strand at 1198.215 kb on - strand at 1198.215 kb on - strand at 1198.215 kb on - strand at 1198.700 kb on + strand, within ABZR86_RS05330 at 1198.708 kb on + strand, within ABZR86_RS05330 at 1198.708 kb on + strand, within ABZR86_RS05330 at 1198.708 kb on + strand, within ABZR86_RS05330 at 1198.709 kb on - strand, within ABZR86_RS05330 at 1198.709 kb on - strand, within ABZR86_RS05330 at 1198.709 kb on - strand, within ABZR86_RS05330 at 1198.973 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.114 kb on + strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.115 kb on - strand, within ABZR86_RS05330 at 1199.369 kb on - strand, within ABZR86_RS05330 at 1199.699 kb on + strand at 1199.741 kb on + strand at 1199.742 kb on - strand at 1199.742 kb on - strand at 1199.742 kb on - strand at 1200.231 kb on + strand, within ABZR86_RS05335 at 1200.231 kb on + strand, within ABZR86_RS05335
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,197,604 + -0.0 1,197,704 + ABZR86_RS05325 0.21 -1.7 1,197,705 - ABZR86_RS05325 0.21 -0.2 1,197,902 + ABZR86_RS05325 0.59 -0.6 1,197,903 - ABZR86_RS05325 0.60 +0.7 1,197,903 - ABZR86_RS05325 0.60 -0.1 1,197,978 + ABZR86_RS05325 0.74 +0.1 1,197,978 + ABZR86_RS05325 0.74 -0.5 1,198,064 + +0.7 1,198,065 - +0.4 1,198,215 - -0.8 1,198,215 - +2.5 1,198,215 - +0.2 1,198,700 + ABZR86_RS05330 0.36 -0.8 1,198,708 + ABZR86_RS05330 0.37 -1.8 1,198,708 + ABZR86_RS05330 0.37 +0.4 1,198,708 + ABZR86_RS05330 0.37 +0.1 1,198,709 - ABZR86_RS05330 0.37 +0.3 1,198,709 - ABZR86_RS05330 0.37 -2.1 1,198,709 - ABZR86_RS05330 0.37 +0.7 1,198,973 + ABZR86_RS05330 0.53 -0.1 1,199,114 + ABZR86_RS05330 0.61 -0.8 1,199,114 + ABZR86_RS05330 0.61 -1.0 1,199,114 + ABZR86_RS05330 0.61 -0.6 1,199,114 + ABZR86_RS05330 0.61 -0.5 1,199,114 + ABZR86_RS05330 0.61 -0.2 1,199,114 + ABZR86_RS05330 0.61 -0.1 1,199,114 + ABZR86_RS05330 0.61 -0.2 1,199,114 + ABZR86_RS05330 0.61 -0.4 1,199,114 + ABZR86_RS05330 0.61 +0.5 1,199,114 + ABZR86_RS05330 0.61 +1.7 1,199,115 - ABZR86_RS05330 0.61 -0.7 1,199,115 - ABZR86_RS05330 0.61 -1.3 1,199,115 - ABZR86_RS05330 0.61 -0.1 1,199,115 - ABZR86_RS05330 0.61 -0.7 1,199,115 - ABZR86_RS05330 0.61 -0.6 1,199,369 - ABZR86_RS05330 0.77 +1.7 1,199,699 + +1.3 1,199,741 + +0.7 1,199,742 - +0.1 1,199,742 - +1.2 1,199,742 - -0.2 1,200,231 + ABZR86_RS05335 0.42 -1.6 1,200,231 + ABZR86_RS05335 0.42 -1.0
Or see this region's nucleotide sequence