Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS02585

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS02580 and ABZR86_RS02585 are separated by 8 nucleotidesABZR86_RS02585 and ABZR86_RS02590 overlap by 23 nucleotidesABZR86_RS02590 and ABZR86_RS02595 overlap by 4 nucleotides ABZR86_RS02580: ABZR86_RS02580 - terminase large subunit, at 522,928 to 524,613 _RS02580 ABZR86_RS02585: ABZR86_RS02585 - phage portal protein, at 524,622 to 525,902 _RS02585 ABZR86_RS02590: ABZR86_RS02590 - head maturation protease, ClpP-related, at 525,880 to 526,734 _RS02590 ABZR86_RS02595: ABZR86_RS02595 - phage major capsid protein, at 526,731 to 527,969 _RS02595 Position (kb) 524 525 526Strain fitness (log2 ratio) -2 -1 0 1at 523.687 kb on + strand, within ABZR86_RS02580at 523.687 kb on + strand, within ABZR86_RS02580at 523.688 kb on - strand, within ABZR86_RS02580at 523.724 kb on - strand, within ABZR86_RS02580at 523.791 kb on + strand, within ABZR86_RS02580at 523.792 kb on - strand, within ABZR86_RS02580at 524.096 kb on + strand, within ABZR86_RS02580at 524.096 kb on + strand, within ABZR86_RS02580at 524.097 kb on - strand, within ABZR86_RS02580at 524.097 kb on - strand, within ABZR86_RS02580at 524.291 kb on + strand, within ABZR86_RS02580at 524.291 kb on + strand, within ABZR86_RS02580at 524.584 kb on + strandat 524.585 kb on - strandat 524.760 kb on + strand, within ABZR86_RS02585at 524.761 kb on - strand, within ABZR86_RS02585at 524.761 kb on - strand, within ABZR86_RS02585at 524.971 kb on - strand, within ABZR86_RS02585at 524.971 kb on - strand, within ABZR86_RS02585at 525.021 kb on + strand, within ABZR86_RS02585at 525.022 kb on - strand, within ABZR86_RS02585at 525.116 kb on + strand, within ABZR86_RS02585at 525.116 kb on + strand, within ABZR86_RS02585at 525.117 kb on - strand, within ABZR86_RS02585at 525.117 kb on - strand, within ABZR86_RS02585at 525.117 kb on - strand, within ABZR86_RS02585at 525.120 kb on + strand, within ABZR86_RS02585at 525.121 kb on - strand, within ABZR86_RS02585at 525.121 kb on - strand, within ABZR86_RS02585at 525.221 kb on + strand, within ABZR86_RS02585at 525.348 kb on + strand, within ABZR86_RS02585at 525.381 kb on + strand, within ABZR86_RS02585at 525.381 kb on + strand, within ABZR86_RS02585at 525.473 kb on + strand, within ABZR86_RS02585at 525.600 kb on + strand, within ABZR86_RS02585at 526.021 kb on + strand, within ABZR86_RS02590at 526.141 kb on + strand, within ABZR86_RS02590at 526.142 kb on - strand, within ABZR86_RS02590at 526.162 kb on + strand, within ABZR86_RS02590at 526.162 kb on + strand, within ABZR86_RS02590at 526.163 kb on - strand, within ABZR86_RS02590at 526.163 kb on - strand, within ABZR86_RS02590at 526.163 kb on - strand, within ABZR86_RS02590at 526.385 kb on - strand, within ABZR86_RS02590at 526.623 kb on + strand, within ABZR86_RS02590at 526.624 kb on - strand, within ABZR86_RS02590

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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523,687 + ABZR86_RS02580 0.45 +0.7
523,687 + ABZR86_RS02580 0.45 +1.2
523,688 - ABZR86_RS02580 0.45 -0.6
523,724 - ABZR86_RS02580 0.47 -0.0
523,791 + ABZR86_RS02580 0.51 +1.2
523,792 - ABZR86_RS02580 0.51 -1.3
524,096 + ABZR86_RS02580 0.69 +0.8
524,096 + ABZR86_RS02580 0.69 -0.2
524,097 - ABZR86_RS02580 0.69 +0.0
524,097 - ABZR86_RS02580 0.69 -0.9
524,291 + ABZR86_RS02580 0.81 +0.7
524,291 + ABZR86_RS02580 0.81 -0.7
524,584 + +0.2
524,585 - -0.7
524,760 + ABZR86_RS02585 0.11 -1.2
524,761 - ABZR86_RS02585 0.11 -0.1
524,761 - ABZR86_RS02585 0.11 +0.2
524,971 - ABZR86_RS02585 0.27 +1.3
524,971 - ABZR86_RS02585 0.27 -1.2
525,021 + ABZR86_RS02585 0.31 -0.7
525,022 - ABZR86_RS02585 0.31 -0.3
525,116 + ABZR86_RS02585 0.39 -1.8
525,116 + ABZR86_RS02585 0.39 -0.8
525,117 - ABZR86_RS02585 0.39 -1.3
525,117 - ABZR86_RS02585 0.39 +0.3
525,117 - ABZR86_RS02585 0.39 -0.0
525,120 + ABZR86_RS02585 0.39 +0.9
525,121 - ABZR86_RS02585 0.39 -0.4
525,121 - ABZR86_RS02585 0.39 +0.0
525,221 + ABZR86_RS02585 0.47 +0.5
525,348 + ABZR86_RS02585 0.57 +0.1
525,381 + ABZR86_RS02585 0.59 -0.6
525,381 + ABZR86_RS02585 0.59 -0.2
525,473 + ABZR86_RS02585 0.66 -0.5
525,600 + ABZR86_RS02585 0.76 +0.2
526,021 + ABZR86_RS02590 0.16 -1.1
526,141 + ABZR86_RS02590 0.31 +0.4
526,142 - ABZR86_RS02590 0.31 -0.7
526,162 + ABZR86_RS02590 0.33 +0.0
526,162 + ABZR86_RS02590 0.33 +0.4
526,163 - ABZR86_RS02590 0.33 +1.0
526,163 - ABZR86_RS02590 0.33 +0.6
526,163 - ABZR86_RS02590 0.33 +0.0
526,385 - ABZR86_RS02590 0.59 -0.6
526,623 + ABZR86_RS02590 0.87 -0.6
526,624 - ABZR86_RS02590 0.87 +0.8

Or see this region's nucleotide sequence