Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS02570 and ABZR86_RS02575 are separated by 311 nucleotides ABZR86_RS02575 and ABZR86_RS02580 are separated by 4 nucleotides ABZR86_RS02580 and ABZR86_RS02585 are separated by 8 nucleotides
ABZR86_RS02570: ABZR86_RS02570 - HNH endonuclease signature motif containing protein, at 522,040 to 522,324
_RS02570
ABZR86_RS02575: ABZR86_RS02575 - hypothetical protein, at 522,636 to 522,923
_RS02575
ABZR86_RS02580: ABZR86_RS02580 - terminase large subunit, at 522,928 to 524,613
_RS02580
ABZR86_RS02585: ABZR86_RS02585 - phage portal protein, at 524,622 to 525,902
_RS02585
Position (kb) 522
523
524
525 Strain fitness (log2 ratio) -2
-1
0
1 at 521.952 kb on + strand at 521.952 kb on + strand at 521.953 kb on - strand at 521.953 kb on - strand at 521.953 kb on - strand at 521.994 kb on + strand at 521.995 kb on - strand at 522.194 kb on + strand, within ABZR86_RS02570 at 522.194 kb on + strand, within ABZR86_RS02570 at 522.195 kb on - strand, within ABZR86_RS02570 at 522.195 kb on - strand, within ABZR86_RS02570 at 522.344 kb on + strand at 522.376 kb on - strand at 522.376 kb on - strand at 522.401 kb on + strand at 522.402 kb on - strand at 522.467 kb on + strand at 522.729 kb on + strand, within ABZR86_RS02575 at 522.729 kb on + strand, within ABZR86_RS02575 at 522.729 kb on + strand, within ABZR86_RS02575 at 522.730 kb on - strand, within ABZR86_RS02575 at 522.749 kb on + strand, within ABZR86_RS02575 at 522.749 kb on + strand, within ABZR86_RS02575 at 522.834 kb on - strand, within ABZR86_RS02575 at 522.927 kb on + strand at 522.927 kb on + strand at 522.927 kb on + strand at 522.927 kb on + strand at 522.927 kb on + strand at 522.928 kb on - strand at 522.928 kb on - strand at 522.928 kb on - strand at 522.928 kb on - strand at 523.004 kb on - strand at 523.052 kb on + strand at 523.053 kb on - strand at 523.103 kb on + strand, within ABZR86_RS02580 at 523.104 kb on - strand, within ABZR86_RS02580 at 523.104 kb on - strand, within ABZR86_RS02580 at 523.309 kb on + strand, within ABZR86_RS02580 at 523.687 kb on + strand, within ABZR86_RS02580 at 523.687 kb on + strand, within ABZR86_RS02580 at 523.688 kb on - strand, within ABZR86_RS02580 at 523.724 kb on - strand, within ABZR86_RS02580 at 523.791 kb on + strand, within ABZR86_RS02580 at 523.792 kb on - strand, within ABZR86_RS02580 at 524.096 kb on + strand, within ABZR86_RS02580 at 524.096 kb on + strand, within ABZR86_RS02580 at 524.097 kb on - strand, within ABZR86_RS02580 at 524.097 kb on - strand, within ABZR86_RS02580 at 524.291 kb on + strand, within ABZR86_RS02580 at 524.291 kb on + strand, within ABZR86_RS02580 at 524.584 kb on + strand at 524.585 kb on - strand at 524.760 kb on + strand, within ABZR86_RS02585 at 524.761 kb on - strand, within ABZR86_RS02585 at 524.761 kb on - strand, within ABZR86_RS02585 at 524.971 kb on - strand, within ABZR86_RS02585 at 524.971 kb on - strand, within ABZR86_RS02585 at 525.021 kb on + strand, within ABZR86_RS02585 at 525.022 kb on - strand, within ABZR86_RS02585 at 525.116 kb on + strand, within ABZR86_RS02585 at 525.116 kb on + strand, within ABZR86_RS02585 at 525.117 kb on - strand, within ABZR86_RS02585 at 525.117 kb on - strand, within ABZR86_RS02585 at 525.117 kb on - strand, within ABZR86_RS02585 at 525.120 kb on + strand, within ABZR86_RS02585 at 525.121 kb on - strand, within ABZR86_RS02585 at 525.121 kb on - strand, within ABZR86_RS02585 at 525.221 kb on + strand, within ABZR86_RS02585 at 525.348 kb on + strand, within ABZR86_RS02585 at 525.381 kb on + strand, within ABZR86_RS02585 at 525.381 kb on + strand, within ABZR86_RS02585 at 525.473 kb on + strand, within ABZR86_RS02585 at 525.600 kb on + strand, within ABZR86_RS02585
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 521,952 + +0.8 521,952 + -0.5 521,953 - +0.2 521,953 - -1.8 521,953 - +0.4 521,994 + -0.9 521,995 - -0.4 522,194 + ABZR86_RS02570 0.54 +0.6 522,194 + ABZR86_RS02570 0.54 -0.6 522,195 - ABZR86_RS02570 0.54 +0.3 522,195 - ABZR86_RS02570 0.54 -0.5 522,344 + -1.7 522,376 - -0.4 522,376 - -0.2 522,401 + -0.1 522,402 - +1.1 522,467 + +0.5 522,729 + ABZR86_RS02575 0.32 -1.8 522,729 + ABZR86_RS02575 0.32 -0.4 522,729 + ABZR86_RS02575 0.32 -0.7 522,730 - ABZR86_RS02575 0.33 -0.1 522,749 + ABZR86_RS02575 0.39 -0.4 522,749 + ABZR86_RS02575 0.39 +0.7 522,834 - ABZR86_RS02575 0.69 -0.2 522,927 + +0.2 522,927 + -0.7 522,927 + -0.2 522,927 + -0.1 522,927 + -0.6 522,928 - +0.2 522,928 - -0.1 522,928 - +0.9 522,928 - -0.4 523,004 - -0.5 523,052 + -0.8 523,053 - -0.2 523,103 + ABZR86_RS02580 0.10 +0.1 523,104 - ABZR86_RS02580 0.10 +0.0 523,104 - ABZR86_RS02580 0.10 +0.8 523,309 + ABZR86_RS02580 0.23 -0.9 523,687 + ABZR86_RS02580 0.45 +0.7 523,687 + ABZR86_RS02580 0.45 +1.2 523,688 - ABZR86_RS02580 0.45 -0.6 523,724 - ABZR86_RS02580 0.47 -0.0 523,791 + ABZR86_RS02580 0.51 +1.2 523,792 - ABZR86_RS02580 0.51 -1.3 524,096 + ABZR86_RS02580 0.69 +0.8 524,096 + ABZR86_RS02580 0.69 -0.2 524,097 - ABZR86_RS02580 0.69 +0.0 524,097 - ABZR86_RS02580 0.69 -0.9 524,291 + ABZR86_RS02580 0.81 +0.7 524,291 + ABZR86_RS02580 0.81 -0.7 524,584 + +0.2 524,585 - -0.7 524,760 + ABZR86_RS02585 0.11 -1.2 524,761 - ABZR86_RS02585 0.11 -0.1 524,761 - ABZR86_RS02585 0.11 +0.2 524,971 - ABZR86_RS02585 0.27 +1.3 524,971 - ABZR86_RS02585 0.27 -1.2 525,021 + ABZR86_RS02585 0.31 -0.7 525,022 - ABZR86_RS02585 0.31 -0.3 525,116 + ABZR86_RS02585 0.39 -1.8 525,116 + ABZR86_RS02585 0.39 -0.8 525,117 - ABZR86_RS02585 0.39 -1.3 525,117 - ABZR86_RS02585 0.39 +0.3 525,117 - ABZR86_RS02585 0.39 -0.0 525,120 + ABZR86_RS02585 0.39 +0.9 525,121 - ABZR86_RS02585 0.39 -0.4 525,121 - ABZR86_RS02585 0.39 +0.0 525,221 + ABZR86_RS02585 0.47 +0.5 525,348 + ABZR86_RS02585 0.57 +0.1 525,381 + ABZR86_RS02585 0.59 -0.6 525,381 + ABZR86_RS02585 0.59 -0.2 525,473 + ABZR86_RS02585 0.66 -0.5 525,600 + ABZR86_RS02585 0.76 +0.2
Or see this region's nucleotide sequence