Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01415 and ABZR86_RS01420 overlap by 8 nucleotides ABZR86_RS01420 and ABZR86_RS01425 are separated by 26 nucleotides ABZR86_RS01425 and ABZR86_RS01430 are separated by 103 nucleotides
ABZR86_RS01415: ABZR86_RS01415 - histidine kinase, at 303,585 to 304,829
_RS01415
ABZR86_RS01420: ABZR86_RS01420 - LytTR family DNA-binding domain-containing protein, at 304,822 to 305,589
_RS01420
ABZR86_RS01425: ABZR86_RS01425 - hypothetical protein, at 305,616 to 305,963
_RS01425
ABZR86_RS01430: ABZR86_RS01430 - S41 family peptidase, at 306,067 to 307,893
_RS01430
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 304.311 kb on + strand, within ABZR86_RS01415 at 304.311 kb on + strand, within ABZR86_RS01415 at 304.311 kb on + strand, within ABZR86_RS01415 at 304.311 kb on + strand, within ABZR86_RS01415 at 304.312 kb on - strand, within ABZR86_RS01415 at 304.312 kb on - strand, within ABZR86_RS01415 at 304.312 kb on - strand, within ABZR86_RS01415 at 304.369 kb on - strand, within ABZR86_RS01415 at 304.369 kb on - strand, within ABZR86_RS01415 at 304.369 kb on - strand, within ABZR86_RS01415 at 304.444 kb on - strand, within ABZR86_RS01415 at 304.444 kb on - strand, within ABZR86_RS01415 at 304.734 kb on + strand at 304.827 kb on + strand at 304.827 kb on + strand at 304.827 kb on + strand at 304.827 kb on + strand at 304.827 kb on + strand at 304.827 kb on + strand at 304.828 kb on - strand at 304.828 kb on - strand at 304.828 kb on - strand at 304.828 kb on - strand at 304.828 kb on - strand at 305.083 kb on + strand, within ABZR86_RS01420 at 305.084 kb on - strand, within ABZR86_RS01420 at 305.119 kb on + strand, within ABZR86_RS01420 at 305.120 kb on - strand, within ABZR86_RS01420 at 305.120 kb on - strand, within ABZR86_RS01420 at 305.332 kb on + strand, within ABZR86_RS01420 at 305.332 kb on + strand, within ABZR86_RS01420 at 305.333 kb on - strand, within ABZR86_RS01420 at 305.333 kb on - strand, within ABZR86_RS01420 at 305.353 kb on + strand, within ABZR86_RS01420 at 305.353 kb on + strand, within ABZR86_RS01420 at 305.353 kb on + strand, within ABZR86_RS01420 at 305.353 kb on + strand, within ABZR86_RS01420 at 305.353 kb on + strand, within ABZR86_RS01420 at 305.354 kb on - strand, within ABZR86_RS01420 at 305.354 kb on - strand, within ABZR86_RS01420 at 305.354 kb on - strand, within ABZR86_RS01420 at 305.627 kb on - strand at 305.627 kb on - strand at 305.627 kb on - strand at 305.627 kb on - strand at 305.641 kb on - strand at 305.966 kb on + strand at 305.966 kb on + strand at 305.966 kb on + strand at 305.966 kb on + strand at 305.967 kb on - strand at 305.967 kb on - strand at 305.967 kb on - strand at 306.019 kb on + strand at 306.019 kb on + strand at 306.020 kb on - strand at 306.052 kb on + strand at 306.052 kb on + strand at 306.052 kb on + strand at 306.052 kb on + strand at 306.233 kb on + strand at 306.233 kb on + strand at 306.234 kb on - strand at 306.323 kb on + strand, within ABZR86_RS01430 at 306.323 kb on + strand, within ABZR86_RS01430 at 306.323 kb on + strand, within ABZR86_RS01430 at 306.323 kb on + strand, within ABZR86_RS01430 at 306.323 kb on + strand, within ABZR86_RS01430 at 306.323 kb on + strand, within ABZR86_RS01430 at 306.323 kb on + strand, within ABZR86_RS01430 at 306.324 kb on - strand, within ABZR86_RS01430 at 306.324 kb on - strand, within ABZR86_RS01430 at 306.324 kb on - strand, within ABZR86_RS01430 at 306.324 kb on - strand, within ABZR86_RS01430 at 306.528 kb on + strand, within ABZR86_RS01430 at 306.529 kb on - strand, within ABZR86_RS01430 at 306.581 kb on + strand, within ABZR86_RS01430 at 306.581 kb on + strand, within ABZR86_RS01430 at 306.582 kb on - strand, within ABZR86_RS01430
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 304,311 + ABZR86_RS01415 0.58 +0.1 304,311 + ABZR86_RS01415 0.58 -0.7 304,311 + ABZR86_RS01415 0.58 -0.4 304,311 + ABZR86_RS01415 0.58 -0.0 304,312 - ABZR86_RS01415 0.58 +0.4 304,312 - ABZR86_RS01415 0.58 -0.8 304,312 - ABZR86_RS01415 0.58 +0.5 304,369 - ABZR86_RS01415 0.63 -0.5 304,369 - ABZR86_RS01415 0.63 +0.7 304,369 - ABZR86_RS01415 0.63 -0.7 304,444 - ABZR86_RS01415 0.69 -0.5 304,444 - ABZR86_RS01415 0.69 +0.0 304,734 + +0.2 304,827 + -0.7 304,827 + +0.3 304,827 + -0.1 304,827 + -0.0 304,827 + -0.3 304,827 + -1.2 304,828 - -0.3 304,828 - +0.3 304,828 - -1.2 304,828 - +0.7 304,828 - +0.1 305,083 + ABZR86_RS01420 0.34 +0.0 305,084 - ABZR86_RS01420 0.34 +0.5 305,119 + ABZR86_RS01420 0.39 +0.6 305,120 - ABZR86_RS01420 0.39 +0.1 305,120 - ABZR86_RS01420 0.39 +0.1 305,332 + ABZR86_RS01420 0.66 +0.7 305,332 + ABZR86_RS01420 0.66 -0.1 305,333 - ABZR86_RS01420 0.67 +0.6 305,333 - ABZR86_RS01420 0.67 +0.3 305,353 + ABZR86_RS01420 0.69 -0.5 305,353 + ABZR86_RS01420 0.69 -0.1 305,353 + ABZR86_RS01420 0.69 -2.1 305,353 + ABZR86_RS01420 0.69 -2.2 305,353 + ABZR86_RS01420 0.69 -0.1 305,354 - ABZR86_RS01420 0.69 -0.6 305,354 - ABZR86_RS01420 0.69 -1.3 305,354 - ABZR86_RS01420 0.69 -0.5 305,627 - -0.4 305,627 - +1.4 305,627 - -0.2 305,627 - +0.1 305,641 - +0.7 305,966 + +0.7 305,966 + +0.3 305,966 + -0.0 305,966 + +0.8 305,967 - +0.7 305,967 - -0.4 305,967 - -0.7 306,019 + -0.8 306,019 + +0.5 306,020 - -0.6 306,052 + +0.7 306,052 + -0.4 306,052 + -0.7 306,052 + -0.6 306,233 + +0.8 306,233 + +1.0 306,234 - +0.5 306,323 + ABZR86_RS01430 0.14 +0.0 306,323 + ABZR86_RS01430 0.14 -0.0 306,323 + ABZR86_RS01430 0.14 +1.2 306,323 + ABZR86_RS01430 0.14 -0.8 306,323 + ABZR86_RS01430 0.14 +0.1 306,323 + ABZR86_RS01430 0.14 -0.0 306,323 + ABZR86_RS01430 0.14 +0.1 306,324 - ABZR86_RS01430 0.14 +0.2 306,324 - ABZR86_RS01430 0.14 +0.6 306,324 - ABZR86_RS01430 0.14 +0.3 306,324 - ABZR86_RS01430 0.14 -1.2 306,528 + ABZR86_RS01430 0.25 -0.7 306,529 - ABZR86_RS01430 0.25 -3.7 306,581 + ABZR86_RS01430 0.28 -1.1 306,581 + ABZR86_RS01430 0.28 -0.1 306,582 - ABZR86_RS01430 0.28 -0.0
Or see this region's nucleotide sequence