Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01205 and ABZR86_RS01210 overlap by 4 nucleotides ABZR86_RS01210 and ABZR86_RS01215 are separated by 2 nucleotides ABZR86_RS01215 and ABZR86_RS01220 overlap by 4 nucleotides ABZR86_RS01220 and ABZR86_RS01225 are separated by 14 nucleotides
ABZR86_RS01205: ABZR86_RS01205 - D-galactanolactonase <small>(from data)</small>, at 250,241 to 251,143
_RS01205
ABZR86_RS01210: ABZR86_RS01210 - SDR family oxidoreductase, at 251,140 to 251,904
_RS01210
ABZR86_RS01215: ABZR86_RS01215 - galactonate dehydratase, at 251,907 to 253,055
_RS01215
ABZR86_RS01220: ABZR86_RS01220 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 253,052 to 253,693
_RS01220
ABZR86_RS01225: ABZR86_RS01225 - 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) <small>(from data)</small>, at 253,708 to 254,628
_RS01225
Position (kb) 251
252
253
254 Strain fitness (log2 ratio) -1
0
1 at 251.064 kb on + strand at 251.065 kb on - strand at 251.065 kb on - strand at 251.110 kb on + strand at 251.111 kb on - strand at 251.144 kb on - strand at 251.144 kb on - strand at 251.423 kb on + strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.583 kb on + strand, within ABZR86_RS01210 at 251.596 kb on - strand, within ABZR86_RS01210 at 251.889 kb on + strand at 251.890 kb on - strand at 251.990 kb on - strand at 251.990 kb on - strand at 252.041 kb on - strand, within ABZR86_RS01215 at 252.041 kb on - strand, within ABZR86_RS01215 at 252.052 kb on + strand, within ABZR86_RS01215 at 252.106 kb on + strand, within ABZR86_RS01215 at 252.107 kb on - strand, within ABZR86_RS01215 at 252.335 kb on - strand, within ABZR86_RS01215 at 252.344 kb on - strand, within ABZR86_RS01215 at 252.448 kb on + strand, within ABZR86_RS01215 at 252.599 kb on - strand, within ABZR86_RS01215 at 252.748 kb on + strand, within ABZR86_RS01215 at 252.749 kb on - strand, within ABZR86_RS01215 at 252.853 kb on + strand, within ABZR86_RS01215 at 252.879 kb on - strand, within ABZR86_RS01215 at 252.905 kb on - strand, within ABZR86_RS01215 at 252.905 kb on - strand, within ABZR86_RS01215 at 253.083 kb on - strand at 253.152 kb on + strand, within ABZR86_RS01220 at 253.383 kb on + strand, within ABZR86_RS01220 at 253.384 kb on - strand, within ABZR86_RS01220 at 253.384 kb on - strand, within ABZR86_RS01220 at 253.384 kb on - strand, within ABZR86_RS01220 at 253.687 kb on + strand at 253.687 kb on + strand at 253.687 kb on + strand at 253.688 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 251,064 + +0.8 251,065 - -0.1 251,065 - -1.5 251,110 + +0.6 251,111 - -0.2 251,144 - +0.0 251,144 - +0.4 251,423 + ABZR86_RS01210 0.37 -0.2 251,424 - ABZR86_RS01210 0.37 -0.9 251,424 - ABZR86_RS01210 0.37 +0.2 251,424 - ABZR86_RS01210 0.37 +0.4 251,583 + ABZR86_RS01210 0.58 +0.7 251,596 - ABZR86_RS01210 0.60 +0.7 251,889 + -0.3 251,890 - -0.7 251,990 - +0.5 251,990 - +1.4 252,041 - ABZR86_RS01215 0.12 +0.1 252,041 - ABZR86_RS01215 0.12 +0.2 252,052 + ABZR86_RS01215 0.13 +0.5 252,106 + ABZR86_RS01215 0.17 -0.2 252,107 - ABZR86_RS01215 0.17 +0.1 252,335 - ABZR86_RS01215 0.37 -0.1 252,344 - ABZR86_RS01215 0.38 +0.0 252,448 + ABZR86_RS01215 0.47 +0.4 252,599 - ABZR86_RS01215 0.60 +0.3 252,748 + ABZR86_RS01215 0.73 -0.5 252,749 - ABZR86_RS01215 0.73 +0.1 252,853 + ABZR86_RS01215 0.82 +0.4 252,879 - ABZR86_RS01215 0.85 -1.5 252,905 - ABZR86_RS01215 0.87 +0.5 252,905 - ABZR86_RS01215 0.87 -0.4 253,083 - -0.9 253,152 + ABZR86_RS01220 0.16 -0.8 253,383 + ABZR86_RS01220 0.52 +0.3 253,384 - ABZR86_RS01220 0.52 +0.3 253,384 - ABZR86_RS01220 0.52 +0.3 253,384 - ABZR86_RS01220 0.52 +0.2 253,687 + -0.1 253,687 + +0.2 253,687 + -0.7 253,688 - -1.2
Or see this region's nucleotide sequence