Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS01200 and ABZR86_RS01205 are separated by 61 nucleotides ABZR86_RS01205 and ABZR86_RS01210 overlap by 4 nucleotides ABZR86_RS01210 and ABZR86_RS01215 are separated by 2 nucleotides
ABZR86_RS01200: ABZR86_RS01200 - sugar porter family MFS transporter, at 248,788 to 250,179
_RS01200
ABZR86_RS01205: ABZR86_RS01205 - D-galactanolactonase <small>(from data)</small>, at 250,241 to 251,143
_RS01205
ABZR86_RS01210: ABZR86_RS01210 - SDR family oxidoreductase, at 251,140 to 251,904
_RS01210
ABZR86_RS01215: ABZR86_RS01215 - galactonate dehydratase, at 251,907 to 253,055
_RS01215
Position (kb) 251
252 Strain fitness (log2 ratio) -1
0
1 at 250.389 kb on + strand, within ABZR86_RS01205 at 250.389 kb on + strand, within ABZR86_RS01205 at 250.389 kb on + strand, within ABZR86_RS01205 at 250.389 kb on + strand, within ABZR86_RS01205 at 250.389 kb on + strand, within ABZR86_RS01205 at 250.389 kb on + strand, within ABZR86_RS01205 at 250.390 kb on - strand, within ABZR86_RS01205 at 250.390 kb on - strand, within ABZR86_RS01205 at 250.390 kb on - strand, within ABZR86_RS01205 at 250.430 kb on - strand, within ABZR86_RS01205 at 250.430 kb on - strand, within ABZR86_RS01205 at 250.656 kb on + strand, within ABZR86_RS01205 at 250.656 kb on + strand, within ABZR86_RS01205 at 250.656 kb on + strand, within ABZR86_RS01205 at 250.657 kb on - strand, within ABZR86_RS01205 at 250.718 kb on - strand, within ABZR86_RS01205 at 251.064 kb on + strand at 251.065 kb on - strand at 251.065 kb on - strand at 251.110 kb on + strand at 251.111 kb on - strand at 251.144 kb on - strand at 251.144 kb on - strand at 251.423 kb on + strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.424 kb on - strand, within ABZR86_RS01210 at 251.583 kb on + strand, within ABZR86_RS01210 at 251.596 kb on - strand, within ABZR86_RS01210 at 251.889 kb on + strand at 251.890 kb on - strand at 251.990 kb on - strand at 251.990 kb on - strand at 252.041 kb on - strand, within ABZR86_RS01215 at 252.041 kb on - strand, within ABZR86_RS01215 at 252.052 kb on + strand, within ABZR86_RS01215 at 252.106 kb on + strand, within ABZR86_RS01215 at 252.107 kb on - strand, within ABZR86_RS01215 at 252.335 kb on - strand, within ABZR86_RS01215 at 252.344 kb on - strand, within ABZR86_RS01215 at 252.448 kb on + strand, within ABZR86_RS01215 at 252.599 kb on - strand, within ABZR86_RS01215 at 252.748 kb on + strand, within ABZR86_RS01215 at 252.749 kb on - strand, within ABZR86_RS01215 at 252.853 kb on + strand, within ABZR86_RS01215 at 252.879 kb on - strand, within ABZR86_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 250,389 + ABZR86_RS01205 0.16 -0.3 250,389 + ABZR86_RS01205 0.16 -0.3 250,389 + ABZR86_RS01205 0.16 -0.3 250,389 + ABZR86_RS01205 0.16 -0.2 250,389 + ABZR86_RS01205 0.16 -0.1 250,389 + ABZR86_RS01205 0.16 +0.3 250,390 - ABZR86_RS01205 0.17 -1.2 250,390 - ABZR86_RS01205 0.17 +0.0 250,390 - ABZR86_RS01205 0.17 -0.2 250,430 - ABZR86_RS01205 0.21 -0.2 250,430 - ABZR86_RS01205 0.21 -0.1 250,656 + ABZR86_RS01205 0.46 +0.5 250,656 + ABZR86_RS01205 0.46 -0.3 250,656 + ABZR86_RS01205 0.46 -0.3 250,657 - ABZR86_RS01205 0.46 +0.6 250,718 - ABZR86_RS01205 0.53 -0.1 251,064 + +0.8 251,065 - -0.1 251,065 - -1.5 251,110 + +0.6 251,111 - -0.2 251,144 - +0.0 251,144 - +0.4 251,423 + ABZR86_RS01210 0.37 -0.2 251,424 - ABZR86_RS01210 0.37 -0.9 251,424 - ABZR86_RS01210 0.37 +0.2 251,424 - ABZR86_RS01210 0.37 +0.4 251,583 + ABZR86_RS01210 0.58 +0.7 251,596 - ABZR86_RS01210 0.60 +0.7 251,889 + -0.3 251,890 - -0.7 251,990 - +0.5 251,990 - +1.4 252,041 - ABZR86_RS01215 0.12 +0.1 252,041 - ABZR86_RS01215 0.12 +0.2 252,052 + ABZR86_RS01215 0.13 +0.5 252,106 + ABZR86_RS01215 0.17 -0.2 252,107 - ABZR86_RS01215 0.17 +0.1 252,335 - ABZR86_RS01215 0.37 -0.1 252,344 - ABZR86_RS01215 0.38 +0.0 252,448 + ABZR86_RS01215 0.47 +0.4 252,599 - ABZR86_RS01215 0.60 +0.3 252,748 + ABZR86_RS01215 0.73 -0.5 252,749 - ABZR86_RS01215 0.73 +0.1 252,853 + ABZR86_RS01215 0.82 +0.4 252,879 - ABZR86_RS01215 0.85 -1.5
Or see this region's nucleotide sequence