Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01200

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01195 and ABZR86_RS01200 are separated by 247 nucleotidesABZR86_RS01200 and ABZR86_RS01205 are separated by 61 nucleotidesABZR86_RS01205 and ABZR86_RS01210 overlap by 4 nucleotides ABZR86_RS01195: ABZR86_RS01195 - RICIN domain-containing protein, at 246,993 to 248,540 _RS01195 ABZR86_RS01200: ABZR86_RS01200 - sugar porter family MFS transporter, at 248,788 to 250,179 _RS01200 ABZR86_RS01205: ABZR86_RS01205 - D-galactanolactonase (from data), at 250,241 to 251,143 _RS01205 ABZR86_RS01210: ABZR86_RS01210 - SDR family oxidoreductase, at 251,140 to 251,904 _RS01210 Position (kb) 248 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1at 247.885 kb on + strand, within ABZR86_RS01195at 247.885 kb on + strand, within ABZR86_RS01195at 247.885 kb on + strand, within ABZR86_RS01195at 247.886 kb on - strand, within ABZR86_RS01195at 247.886 kb on - strand, within ABZR86_RS01195at 247.886 kb on - strand, within ABZR86_RS01195at 247.908 kb on + strand, within ABZR86_RS01195at 247.987 kb on + strand, within ABZR86_RS01195at 247.987 kb on + strand, within ABZR86_RS01195at 247.987 kb on + strand, within ABZR86_RS01195at 247.988 kb on - strand, within ABZR86_RS01195at 248.170 kb on + strand, within ABZR86_RS01195at 248.171 kb on - strand, within ABZR86_RS01195at 248.171 kb on - strand, within ABZR86_RS01195at 248.171 kb on - strand, within ABZR86_RS01195at 248.203 kb on + strand, within ABZR86_RS01195at 248.203 kb on + strand, within ABZR86_RS01195at 248.204 kb on - strand, within ABZR86_RS01195at 248.263 kb on + strand, within ABZR86_RS01195at 248.263 kb on + strand, within ABZR86_RS01195at 248.263 kb on + strand, within ABZR86_RS01195at 248.264 kb on - strand, within ABZR86_RS01195at 248.389 kb on + strandat 248.389 kb on + strandat 248.389 kb on + strandat 248.508 kb on + strandat 248.622 kb on - strandat 248.630 kb on + strandat 248.630 kb on + strandat 248.645 kb on + strandat 248.645 kb on + strandat 248.646 kb on - strandat 249.131 kb on + strand, within ABZR86_RS01200at 249.132 kb on - strand, within ABZR86_RS01200at 249.132 kb on - strand, within ABZR86_RS01200at 249.132 kb on - strand, within ABZR86_RS01200at 249.215 kb on + strand, within ABZR86_RS01200at 249.357 kb on - strand, within ABZR86_RS01200at 249.359 kb on + strand, within ABZR86_RS01200at 249.360 kb on - strand, within ABZR86_RS01200at 249.360 kb on - strand, within ABZR86_RS01200at 249.677 kb on + strand, within ABZR86_RS01200at 249.678 kb on - strand, within ABZR86_RS01200at 249.738 kb on - strand, within ABZR86_RS01200at 249.738 kb on - strand, within ABZR86_RS01200at 249.738 kb on - strand, within ABZR86_RS01200at 249.763 kb on - strand, within ABZR86_RS01200at 249.789 kb on - strand, within ABZR86_RS01200at 249.789 kb on - strand, within ABZR86_RS01200at 250.122 kb on + strandat 250.122 kb on + strandat 250.122 kb on + strandat 250.124 kb on + strandat 250.124 kb on + strandat 250.124 kb on + strandat 250.124 kb on + strandat 250.125 kb on - strandat 250.125 kb on - strandat 250.125 kb on - strandat 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.389 kb on + strand, within ABZR86_RS01205at 250.390 kb on - strand, within ABZR86_RS01205at 250.390 kb on - strand, within ABZR86_RS01205at 250.390 kb on - strand, within ABZR86_RS01205at 250.430 kb on - strand, within ABZR86_RS01205at 250.430 kb on - strand, within ABZR86_RS01205at 250.656 kb on + strand, within ABZR86_RS01205at 250.656 kb on + strand, within ABZR86_RS01205at 250.656 kb on + strand, within ABZR86_RS01205at 250.657 kb on - strand, within ABZR86_RS01205at 250.718 kb on - strand, within ABZR86_RS01205at 251.064 kb on + strandat 251.065 kb on - strandat 251.065 kb on - strandat 251.110 kb on + strandat 251.111 kb on - strandat 251.144 kb on - strandat 251.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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247,885 + ABZR86_RS01195 0.58 +0.8
247,885 + ABZR86_RS01195 0.58 +0.1
247,885 + ABZR86_RS01195 0.58 -1.4
247,886 - ABZR86_RS01195 0.58 -0.3
247,886 - ABZR86_RS01195 0.58 -0.3
247,886 - ABZR86_RS01195 0.58 -0.4
247,908 + ABZR86_RS01195 0.59 -1.1
247,987 + ABZR86_RS01195 0.64 -0.1
247,987 + ABZR86_RS01195 0.64 -0.6
247,987 + ABZR86_RS01195 0.64 +0.8
247,988 - ABZR86_RS01195 0.64 -0.6
248,170 + ABZR86_RS01195 0.76 -0.2
248,171 - ABZR86_RS01195 0.76 +0.5
248,171 - ABZR86_RS01195 0.76 -0.6
248,171 - ABZR86_RS01195 0.76 +0.6
248,203 + ABZR86_RS01195 0.78 -0.7
248,203 + ABZR86_RS01195 0.78 +0.5
248,204 - ABZR86_RS01195 0.78 -0.9
248,263 + ABZR86_RS01195 0.82 +1.5
248,263 + ABZR86_RS01195 0.82 -0.2
248,263 + ABZR86_RS01195 0.82 -0.9
248,264 - ABZR86_RS01195 0.82 -2.1
248,389 + +0.1
248,389 + -3.5
248,389 + -1.1
248,508 + +0.2
248,622 - +0.2
248,630 + +0.2
248,630 + -0.3
248,645 + -2.9
248,645 + -0.5
248,646 - -0.3
249,131 + ABZR86_RS01200 0.25 +0.2
249,132 - ABZR86_RS01200 0.25 +1.1
249,132 - ABZR86_RS01200 0.25 -0.7
249,132 - ABZR86_RS01200 0.25 +0.2
249,215 + ABZR86_RS01200 0.31 -0.2
249,357 - ABZR86_RS01200 0.41 -0.2
249,359 + ABZR86_RS01200 0.41 +0.3
249,360 - ABZR86_RS01200 0.41 +1.3
249,360 - ABZR86_RS01200 0.41 +1.0
249,677 + ABZR86_RS01200 0.64 -0.1
249,678 - ABZR86_RS01200 0.64 +0.4
249,738 - ABZR86_RS01200 0.68 +0.6
249,738 - ABZR86_RS01200 0.68 +0.3
249,738 - ABZR86_RS01200 0.68 +0.3
249,763 - ABZR86_RS01200 0.70 +0.1
249,789 - ABZR86_RS01200 0.72 -0.3
249,789 - ABZR86_RS01200 0.72 +0.9
250,122 + +1.3
250,122 + -1.5
250,122 + -0.5
250,124 + +1.0
250,124 + +0.9
250,124 + -1.1
250,124 + -0.8
250,125 - -0.9
250,125 - -0.1
250,125 - -0.7
250,389 + ABZR86_RS01205 0.16 -0.3
250,389 + ABZR86_RS01205 0.16 -0.3
250,389 + ABZR86_RS01205 0.16 -0.3
250,389 + ABZR86_RS01205 0.16 -0.2
250,389 + ABZR86_RS01205 0.16 -0.1
250,389 + ABZR86_RS01205 0.16 +0.3
250,390 - ABZR86_RS01205 0.17 -1.2
250,390 - ABZR86_RS01205 0.17 +0.0
250,390 - ABZR86_RS01205 0.17 -0.2
250,430 - ABZR86_RS01205 0.21 -0.2
250,430 - ABZR86_RS01205 0.21 -0.1
250,656 + ABZR86_RS01205 0.46 +0.5
250,656 + ABZR86_RS01205 0.46 -0.3
250,656 + ABZR86_RS01205 0.46 -0.3
250,657 - ABZR86_RS01205 0.46 +0.6
250,718 - ABZR86_RS01205 0.53 -0.1
251,064 + +0.8
251,065 - -0.1
251,065 - -1.5
251,110 + +0.6
251,111 - -0.2
251,144 - +0.0
251,144 - +0.4

Or see this region's nucleotide sequence