Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3109

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3108 and DvMF_3109 are separated by 144 nucleotidesDvMF_3109 and DvMF_3110 are separated by 253 nucleotides DvMF_3108: DvMF_3108 - Rhomboid family protein (RefSeq), at 3,919,575 to 3,920,606 _3108 DvMF_3109: DvMF_3109 - dolichyl-phosphate-mannose-protein mannosyltransferase family protein (RefSeq), at 3,920,751 to 3,922,748 _3109 DvMF_3110: DvMF_3110 - no description, at 3,923,002 to 3,923,571 _3110 Position (kb) 3920 3921 3922 3923Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 3919.969 kb on - strand, within DvMF_3108at 3920.010 kb on + strand, within DvMF_3108at 3920.134 kb on + strand, within DvMF_3108at 3920.304 kb on + strand, within DvMF_3108at 3920.400 kb on - strand, within DvMF_3108at 3920.600 kb on + strandat 3921.115 kb on + strand, within DvMF_3109at 3921.853 kb on + strand, within DvMF_3109at 3921.860 kb on - strand, within DvMF_3109at 3921.860 kb on - strand, within DvMF_3109at 3922.179 kb on + strand, within DvMF_3109at 3922.262 kb on + strand, within DvMF_3109at 3922.726 kb on + strandat 3923.563 kb on - strandat 3923.563 kb on - strandat 3923.601 kb on + strandat 3923.721 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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3,919,969 - DvMF_3108 0.38 -1.3
3,920,010 + DvMF_3108 0.42 -2.5
3,920,134 + DvMF_3108 0.54 -0.3
3,920,304 + DvMF_3108 0.71 -0.8
3,920,400 - DvMF_3108 0.80 -0.8
3,920,600 + -2.7
3,921,115 + DvMF_3109 0.18 -1.7
3,921,853 + DvMF_3109 0.55 +1.5
3,921,860 - DvMF_3109 0.56 +0.6
3,921,860 - DvMF_3109 0.56 +2.0
3,922,179 + DvMF_3109 0.71 +0.2
3,922,262 + DvMF_3109 0.76 -0.6
3,922,726 + +1.1
3,923,563 - +9.4
3,923,563 - +4.2
3,923,601 + -0.8
3,923,721 + -1.3

Or see this region's nucleotide sequence