Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2982 and DvMF_2983 are separated by 97 nucleotides DvMF_2983 and DvMF_2984 are separated by 176 nucleotides DvMF_2984 and DvMF_2985 are separated by 101 nucleotides
DvMF_2982: DvMF_2982 - SlyX family protein (RefSeq), at 3,755,778 to 3,755,999
_2982
DvMF_2983: DvMF_2983 - protein of unknown function DUF55 (RefSeq), at 3,756,097 to 3,756,564
_2983
DvMF_2984: DvMF_2984 - hypothetical protein (RefSeq), at 3,756,741 to 3,759,431
_2984
DvMF_2985: DvMF_2985 - Radical SAM domain protein (RefSeq), at 3,759,533 to 3,761,848
_2985
Position (kb)
3756
3757
3758
3759
3760 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7 at 3755.979 kb on + strand at 3756.027 kb on - strand at 3756.238 kb on - strand, within DvMF_2983 at 3756.355 kb on - strand, within DvMF_2983 at 3756.422 kb on - strand, within DvMF_2983 at 3756.422 kb on - strand, within DvMF_2983 at 3756.539 kb on + strand at 3756.616 kb on + strand at 3756.859 kb on - strand at 3756.980 kb on - strand at 3757.096 kb on + strand, within DvMF_2984 at 3757.375 kb on + strand, within DvMF_2984 at 3757.382 kb on + strand, within DvMF_2984 at 3757.488 kb on - strand, within DvMF_2984 at 3757.866 kb on - strand, within DvMF_2984 at 3758.130 kb on - strand, within DvMF_2984 at 3758.260 kb on + strand, within DvMF_2984 at 3758.268 kb on - strand, within DvMF_2984 at 3758.309 kb on + strand, within DvMF_2984 at 3758.477 kb on + strand, within DvMF_2984 at 3758.601 kb on + strand, within DvMF_2984 at 3759.065 kb on + strand, within DvMF_2984 at 3759.073 kb on - strand, within DvMF_2984 at 3759.549 kb on + strand at 3759.640 kb on - strand at 3759.744 kb on + strand at 3759.772 kb on - strand, within DvMF_2985 at 3759.881 kb on - strand, within DvMF_2985 at 3759.890 kb on + strand, within DvMF_2985 at 3760.005 kb on - strand, within DvMF_2985 at 3760.059 kb on - strand, within DvMF_2985 at 3760.141 kb on - strand, within DvMF_2985 at 3760.174 kb on - strand, within DvMF_2985 at 3760.239 kb on + strand, within DvMF_2985 at 3760.348 kb on + strand, within DvMF_2985 at 3760.354 kb on + strand, within DvMF_2985
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 3,755,979 + -0.4 3,756,027 - +0.2 3,756,238 - DvMF_2983 0.30 -0.4 3,756,355 - DvMF_2983 0.55 -0.9 3,756,422 - DvMF_2983 0.69 -0.5 3,756,422 - DvMF_2983 0.69 -1.0 3,756,539 + -0.5 3,756,616 + -0.4 3,756,859 - -0.8 3,756,980 - -1.2 3,757,096 + DvMF_2984 0.13 -2.6 3,757,375 + DvMF_2984 0.24 -0.7 3,757,382 + DvMF_2984 0.24 -1.1 3,757,488 - DvMF_2984 0.28 +1.4 3,757,866 - DvMF_2984 0.42 +0.0 3,758,130 - DvMF_2984 0.52 -0.2 3,758,260 + DvMF_2984 0.56 -0.1 3,758,268 - DvMF_2984 0.57 -0.8 3,758,309 + DvMF_2984 0.58 -1.9 3,758,477 + DvMF_2984 0.65 -0.3 3,758,601 + DvMF_2984 0.69 -2.1 3,759,065 + DvMF_2984 0.86 -0.9 3,759,073 - DvMF_2984 0.87 -0.6 3,759,549 + -0.8 3,759,640 - -0.1 3,759,744 + -0.5 3,759,772 - DvMF_2985 0.10 -0.7 3,759,881 - DvMF_2985 0.15 -0.9 3,759,890 + DvMF_2985 0.15 -0.7 3,760,005 - DvMF_2985 0.20 -1.2 3,760,059 - DvMF_2985 0.23 -3.2 3,760,141 - DvMF_2985 0.26 -1.4 3,760,174 - DvMF_2985 0.28 -0.7 3,760,239 + DvMF_2985 0.30 -1.0 3,760,348 + DvMF_2985 0.35 +7.5 3,760,354 + DvMF_2985 0.35 -0.8
Or see this region's nucleotide sequence