Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2984

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2982 and DvMF_2983 are separated by 97 nucleotidesDvMF_2983 and DvMF_2984 are separated by 176 nucleotidesDvMF_2984 and DvMF_2985 are separated by 101 nucleotides DvMF_2982: DvMF_2982 - SlyX family protein (RefSeq), at 3,755,778 to 3,755,999 _2982 DvMF_2983: DvMF_2983 - protein of unknown function DUF55 (RefSeq), at 3,756,097 to 3,756,564 _2983 DvMF_2984: DvMF_2984 - hypothetical protein (RefSeq), at 3,756,741 to 3,759,431 _2984 DvMF_2985: DvMF_2985 - Radical SAM domain protein (RefSeq), at 3,759,533 to 3,761,848 _2985 Position (kb) 3756 3757 3758 3759 3760Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 3755.979 kb on + strandat 3756.027 kb on - strandat 3756.238 kb on - strand, within DvMF_2983at 3756.355 kb on - strand, within DvMF_2983at 3756.422 kb on - strand, within DvMF_2983at 3756.422 kb on - strand, within DvMF_2983at 3756.539 kb on + strandat 3756.616 kb on + strandat 3756.859 kb on - strandat 3756.980 kb on - strandat 3757.096 kb on + strand, within DvMF_2984at 3757.375 kb on + strand, within DvMF_2984at 3757.382 kb on + strand, within DvMF_2984at 3757.488 kb on - strand, within DvMF_2984at 3757.866 kb on - strand, within DvMF_2984at 3758.130 kb on - strand, within DvMF_2984at 3758.260 kb on + strand, within DvMF_2984at 3758.268 kb on - strand, within DvMF_2984at 3758.309 kb on + strand, within DvMF_2984at 3758.477 kb on + strand, within DvMF_2984at 3758.601 kb on + strand, within DvMF_2984at 3759.065 kb on + strand, within DvMF_2984at 3759.073 kb on - strand, within DvMF_2984at 3759.549 kb on + strandat 3759.640 kb on - strandat 3759.744 kb on + strandat 3759.772 kb on - strand, within DvMF_2985at 3759.881 kb on - strand, within DvMF_2985at 3759.890 kb on + strand, within DvMF_2985at 3760.005 kb on - strand, within DvMF_2985at 3760.059 kb on - strand, within DvMF_2985at 3760.141 kb on - strand, within DvMF_2985at 3760.174 kb on - strand, within DvMF_2985at 3760.239 kb on + strand, within DvMF_2985at 3760.348 kb on + strand, within DvMF_2985at 3760.354 kb on + strand, within DvMF_2985

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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3,755,979 + -0.4
3,756,027 - +0.2
3,756,238 - DvMF_2983 0.30 -0.4
3,756,355 - DvMF_2983 0.55 -0.9
3,756,422 - DvMF_2983 0.69 -0.5
3,756,422 - DvMF_2983 0.69 -1.0
3,756,539 + -0.5
3,756,616 + -0.4
3,756,859 - -0.8
3,756,980 - -1.2
3,757,096 + DvMF_2984 0.13 -2.6
3,757,375 + DvMF_2984 0.24 -0.7
3,757,382 + DvMF_2984 0.24 -1.1
3,757,488 - DvMF_2984 0.28 +1.4
3,757,866 - DvMF_2984 0.42 +0.0
3,758,130 - DvMF_2984 0.52 -0.2
3,758,260 + DvMF_2984 0.56 -0.1
3,758,268 - DvMF_2984 0.57 -0.8
3,758,309 + DvMF_2984 0.58 -1.9
3,758,477 + DvMF_2984 0.65 -0.3
3,758,601 + DvMF_2984 0.69 -2.1
3,759,065 + DvMF_2984 0.86 -0.9
3,759,073 - DvMF_2984 0.87 -0.6
3,759,549 + -0.8
3,759,640 - -0.1
3,759,744 + -0.5
3,759,772 - DvMF_2985 0.10 -0.7
3,759,881 - DvMF_2985 0.15 -0.9
3,759,890 + DvMF_2985 0.15 -0.7
3,760,005 - DvMF_2985 0.20 -1.2
3,760,059 - DvMF_2985 0.23 -3.2
3,760,141 - DvMF_2985 0.26 -1.4
3,760,174 - DvMF_2985 0.28 -0.7
3,760,239 + DvMF_2985 0.30 -1.0
3,760,348 + DvMF_2985 0.35 +7.5
3,760,354 + DvMF_2985 0.35 -0.8

Or see this region's nucleotide sequence