Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2934

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2932 and DvMF_2933 are separated by 171 nucleotidesDvMF_2933 and DvMF_2934 overlap by 4 nucleotidesDvMF_2934 and DvMF_2935 are separated by 113 nucleotides DvMF_2932: DvMF_2932 - hypothetical protein (RefSeq), at 3,705,472 to 3,705,984 _2932 DvMF_2933: DvMF_2933 - glutaredoxin (RefSeq), at 3,706,156 to 3,706,419 _2933 DvMF_2934: DvMF_2934 - hypothetical protein (RefSeq), at 3,706,416 to 3,706,760 _2934 DvMF_2935: DvMF_2935 - PfkB domain protein (RefSeq), at 3,706,874 to 3,707,800 _2935 Position (kb) 3706 3707Strain fitness (log2 ratio) -2 -1 0 1at 3705.463 kb on + strandat 3705.531 kb on - strand, within DvMF_2932at 3705.533 kb on + strand, within DvMF_2932at 3705.657 kb on + strand, within DvMF_2932at 3705.716 kb on + strand, within DvMF_2932at 3705.799 kb on + strand, within DvMF_2932at 3705.947 kb on - strandat 3706.060 kb on + strandat 3706.275 kb on + strand, within DvMF_2933at 3706.576 kb on + strand, within DvMF_2934at 3706.853 kb on + strandat 3707.009 kb on - strand, within DvMF_2935at 3707.106 kb on - strand, within DvMF_2935at 3707.191 kb on - strand, within DvMF_2935at 3707.277 kb on - strand, within DvMF_2935

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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3,705,463 + -0.6
3,705,531 - DvMF_2932 0.12 -0.2
3,705,533 + DvMF_2932 0.12 -0.5
3,705,657 + DvMF_2932 0.36 -0.9
3,705,716 + DvMF_2932 0.48 +1.2
3,705,799 + DvMF_2932 0.64 -1.1
3,705,947 - +0.6
3,706,060 + +0.9
3,706,275 + DvMF_2933 0.45 -0.6
3,706,576 + DvMF_2934 0.46 -1.1
3,706,853 + -0.6
3,707,009 - DvMF_2935 0.15 -1.2
3,707,106 - DvMF_2935 0.25 -2.7
3,707,191 - DvMF_2935 0.34 +0.4
3,707,277 - DvMF_2935 0.43 -1.1

Or see this region's nucleotide sequence