Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2846

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2845 and DvMF_2846 are separated by 321 nucleotidesDvMF_2846 and DvMF_2847 are separated by 400 nucleotides DvMF_2845: DvMF_2845 - excinuclease ABC, C subunit (RefSeq), at 3,594,321 to 3,596,609 _2845 DvMF_2846: DvMF_2846 - hypothetical protein (RefSeq), at 3,596,931 to 3,598,325 _2846 DvMF_2847: DvMF_2847 - no description, at 3,598,726 to 3,600,155 _2847 Position (kb) 3596 3597 3598 3599Strain fitness (log2 ratio) -3 -2 -1 0 1at 3595.932 kb on - strand, within DvMF_2845at 3596.075 kb on + strand, within DvMF_2845at 3596.082 kb on + strand, within DvMF_2845at 3596.083 kb on - strand, within DvMF_2845at 3596.083 kb on - strand, within DvMF_2845at 3596.083 kb on - strand, within DvMF_2845at 3596.083 kb on - strand, within DvMF_2845at 3596.083 kb on - strand, within DvMF_2845at 3596.153 kb on + strand, within DvMF_2845at 3596.153 kb on + strand, within DvMF_2845at 3596.156 kb on - strand, within DvMF_2845at 3596.256 kb on + strand, within DvMF_2845at 3596.347 kb on + strand, within DvMF_2845at 3596.511 kb on + strandat 3598.546 kb on + strandat 3598.610 kb on + strandat 3598.955 kb on - strand, within DvMF_2847at 3598.992 kb on - strand, within DvMF_2847at 3599.177 kb on + strand, within DvMF_2847at 3599.177 kb on + strand, within DvMF_2847at 3599.185 kb on - strand, within DvMF_2847at 3599.301 kb on + strand, within DvMF_2847

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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3,595,932 - DvMF_2845 0.70 -1.1
3,596,075 + DvMF_2845 0.77 -1.8
3,596,082 + DvMF_2845 0.77 -0.5
3,596,083 - DvMF_2845 0.77 -0.4
3,596,083 - DvMF_2845 0.77 -2.1
3,596,083 - DvMF_2845 0.77 -0.7
3,596,083 - DvMF_2845 0.77 -1.0
3,596,083 - DvMF_2845 0.77 -0.8
3,596,153 + DvMF_2845 0.80 +0.1
3,596,153 + DvMF_2845 0.80 -1.0
3,596,156 - DvMF_2845 0.80 -0.4
3,596,256 + DvMF_2845 0.85 -0.3
3,596,347 + DvMF_2845 0.89 -1.1
3,596,511 + -3.0
3,598,546 + +0.1
3,598,610 + -1.8
3,598,955 - DvMF_2847 0.16 -0.2
3,598,992 - DvMF_2847 0.19 -0.1
3,599,177 + DvMF_2847 0.32 -0.2
3,599,177 + DvMF_2847 0.32 -0.1
3,599,185 - DvMF_2847 0.32 -0.5
3,599,301 + DvMF_2847 0.40 -0.3

Or see this region's nucleotide sequence