Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2762 and DvMF_2763 are separated by 460 nucleotides DvMF_2763 and DvMF_2764 are separated by 53 nucleotides
DvMF_2762: DvMF_2762 - diguanylate cyclase with hemerythrin-like metal-binding domain (RefSeq), at 3,492,524 to 3,494,419
_2762
DvMF_2763: DvMF_2763 - ABC-type tungstate transport system, permease component (RefSeq), at 3,494,880 to 3,495,704
_2763
DvMF_2764: DvMF_2764 - hypothetical protein (RefSeq), at 3,495,758 to 3,497,035
_2764
Position (kb)
3494
3495
3496 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3493.908 kb on + strand, within DvMF_2762 at 3493.916 kb on - strand, within DvMF_2762 at 3493.916 kb on - strand, within DvMF_2762 at 3493.916 kb on - strand, within DvMF_2762 at 3494.144 kb on - strand, within DvMF_2762 at 3494.265 kb on - strand at 3494.286 kb on - strand at 3494.429 kb on - strand at 3494.472 kb on + strand at 3494.472 kb on + strand at 3494.480 kb on - strand at 3494.664 kb on + strand at 3494.665 kb on - strand at 3494.957 kb on - strand at 3494.957 kb on - strand at 3495.097 kb on - strand, within DvMF_2763 at 3495.107 kb on - strand, within DvMF_2763 at 3495.216 kb on - strand, within DvMF_2763 at 3495.320 kb on + strand, within DvMF_2763 at 3495.430 kb on - strand, within DvMF_2763 at 3495.568 kb on - strand, within DvMF_2763 at 3495.729 kb on + strand at 3495.915 kb on - strand, within DvMF_2764 at 3495.961 kb on + strand, within DvMF_2764 at 3496.558 kb on - strand, within DvMF_2764 at 3496.656 kb on + strand, within DvMF_2764
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 3,493,908 + DvMF_2762 0.73 -0.7 3,493,916 - DvMF_2762 0.73 -0.4 3,493,916 - DvMF_2762 0.73 -0.0 3,493,916 - DvMF_2762 0.73 -0.5 3,494,144 - DvMF_2762 0.85 -1.2 3,494,265 - -0.5 3,494,286 - +0.0 3,494,429 - -2.0 3,494,472 + -1.2 3,494,472 + -1.0 3,494,480 - -1.0 3,494,664 + -0.7 3,494,665 - -1.1 3,494,957 - -1.2 3,494,957 - -0.6 3,495,097 - DvMF_2763 0.26 -0.5 3,495,107 - DvMF_2763 0.28 +0.1 3,495,216 - DvMF_2763 0.41 -0.8 3,495,320 + DvMF_2763 0.53 -0.2 3,495,430 - DvMF_2763 0.67 -0.7 3,495,568 - DvMF_2763 0.83 -1.2 3,495,729 + -0.9 3,495,915 - DvMF_2764 0.12 +1.7 3,495,961 + DvMF_2764 0.16 +0.2 3,496,558 - DvMF_2764 0.63 +0.7 3,496,656 + DvMF_2764 0.70 +2.7
Or see this region's nucleotide sequence