Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2402 and DvMF_2403 are separated by 598 nucleotides DvMF_2403 and DvMF_2404 are separated by 131 nucleotides DvMF_2404 and DvMF_2405 are separated by 670 nucleotides
DvMF_2402: DvMF_2402 - nickel ABC transporter, periplasmic nickel-binding protein (RefSeq), at 3,035,450 to 3,037,066
_2402
DvMF_2403: DvMF_2403 - TOBE domain protein (RefSeq), at 3,037,665 to 3,037,874
_2403
DvMF_2404: DvMF_2404 - protein of unknown function DUF1105 (RefSeq), at 3,038,006 to 3,038,593
_2404
DvMF_2405: DvMF_2405 - Tir chaperone family protein (RefSeq), at 3,039,264 to 3,039,725
_2405
Position (kb)
3038
3039 Strain fitness (log2 ratio)
-1
0
1 at 3037.012 kb on + strand at 3037.475 kb on + strand at 3037.564 kb on - strand at 3037.671 kb on - strand at 3037.686 kb on - strand, within DvMF_2403 at 3037.770 kb on + strand, within DvMF_2403 at 3037.802 kb on - strand, within DvMF_2403 at 3038.028 kb on - strand at 3038.028 kb on - strand at 3038.078 kb on - strand, within DvMF_2404 at 3038.135 kb on + strand, within DvMF_2404 at 3038.135 kb on + strand, within DvMF_2404 at 3038.166 kb on - strand, within DvMF_2404 at 3038.210 kb on + strand, within DvMF_2404 at 3038.427 kb on + strand, within DvMF_2404 at 3038.435 kb on - strand, within DvMF_2404 at 3039.012 kb on + strand at 3039.109 kb on + strand at 3039.141 kb on + strand at 3039.235 kb on - strand at 3039.242 kb on + strand at 3039.319 kb on + strand, within DvMF_2405 at 3039.376 kb on + strand, within DvMF_2405 at 3039.387 kb on + strand, within DvMF_2405 at 3039.392 kb on + strand, within DvMF_2405 at 3039.400 kb on - strand, within DvMF_2405 at 3039.408 kb on + strand, within DvMF_2405 at 3039.492 kb on - strand, within DvMF_2405 at 3039.531 kb on + strand, within DvMF_2405
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 3,037,012 + +1.3 3,037,475 + -0.8 3,037,564 - +0.1 3,037,671 - -0.4 3,037,686 - DvMF_2403 0.10 -0.3 3,037,770 + DvMF_2403 0.50 -0.5 3,037,802 - DvMF_2403 0.65 +0.1 3,038,028 - -1.2 3,038,028 - +0.1 3,038,078 - DvMF_2404 0.12 +0.4 3,038,135 + DvMF_2404 0.22 +1.1 3,038,135 + DvMF_2404 0.22 -0.7 3,038,166 - DvMF_2404 0.27 -0.5 3,038,210 + DvMF_2404 0.35 +0.7 3,038,427 + DvMF_2404 0.72 -0.5 3,038,435 - DvMF_2404 0.73 -0.6 3,039,012 + -0.1 3,039,109 + +1.0 3,039,141 + -0.6 3,039,235 - -0.8 3,039,242 + -0.1 3,039,319 + DvMF_2405 0.12 -0.1 3,039,376 + DvMF_2405 0.24 -0.5 3,039,387 + DvMF_2405 0.27 -0.4 3,039,392 + DvMF_2405 0.28 -0.4 3,039,400 - DvMF_2405 0.29 -0.6 3,039,408 + DvMF_2405 0.31 -0.6 3,039,492 - DvMF_2405 0.49 -0.6 3,039,531 + DvMF_2405 0.58 -0.8
Or see this region's nucleotide sequence