Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2242

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2241 and DvMF_2242 are separated by 289 nucleotidesDvMF_2242 and DvMF_2243 are separated by 519 nucleotides DvMF_2241: DvMF_2241 - benzoate transporter (RefSeq), at 2,813,881 to 2,815,104 _2241 DvMF_2242: DvMF_2242 - putative signal transduction protein (RefSeq), at 2,815,394 to 2,816,470 _2242 DvMF_2243: DvMF_2243 - AMP-dependent synthetase and ligase (RefSeq), at 2,816,990 to 2,818,678 _2243 Position (kb) 2815 2816 2817Strain fitness (log2 ratio) -2 -1 0 1at 2814.433 kb on + strand, within DvMF_2241at 2814.527 kb on + strand, within DvMF_2241at 2814.527 kb on + strand, within DvMF_2241at 2814.830 kb on - strand, within DvMF_2241at 2814.892 kb on + strand, within DvMF_2241at 2814.937 kb on + strand, within DvMF_2241at 2815.220 kb on - strandat 2815.418 kb on + strandat 2815.504 kb on - strand, within DvMF_2242at 2815.551 kb on + strand, within DvMF_2242at 2815.599 kb on - strand, within DvMF_2242at 2815.628 kb on - strand, within DvMF_2242at 2815.977 kb on + strand, within DvMF_2242at 2816.330 kb on - strand, within DvMF_2242at 2816.342 kb on + strand, within DvMF_2242at 2816.417 kb on + strandat 2816.527 kb on + strandat 2817.084 kb on + strandat 2817.091 kb on - strandat 2817.211 kb on + strand, within DvMF_2243

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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2,814,433 + DvMF_2241 0.45 -0.8
2,814,527 + DvMF_2241 0.53 -0.4
2,814,527 + DvMF_2241 0.53 +0.8
2,814,830 - DvMF_2241 0.78 -0.8
2,814,892 + DvMF_2241 0.83 -2.2
2,814,937 + DvMF_2241 0.86 -2.7
2,815,220 - -1.9
2,815,418 + -2.6
2,815,504 - DvMF_2242 0.10 -0.1
2,815,551 + DvMF_2242 0.15 -2.4
2,815,599 - DvMF_2242 0.19 -0.2
2,815,628 - DvMF_2242 0.22 -1.8
2,815,977 + DvMF_2242 0.54 -1.0
2,816,330 - DvMF_2242 0.87 -0.1
2,816,342 + DvMF_2242 0.88 +0.3
2,816,417 + -1.1
2,816,527 + -1.0
2,817,084 + -0.1
2,817,091 - -0.1
2,817,211 + DvMF_2243 0.13 -1.6

Or see this region's nucleotide sequence