Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2093

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2092 and DvMF_2093 are separated by 96 nucleotidesDvMF_2093 and DvMF_2094 are separated by 99 nucleotides DvMF_2092: DvMF_2092 - hypothetical protein (RefSeq), at 2,606,731 to 2,608,170 _2092 DvMF_2093: DvMF_2093 - hypothetical protein (RefSeq), at 2,608,267 to 2,608,440 _2093 DvMF_2094: DvMF_2094 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,608,540 to 2,611,158 _2094 Position (kb) 2608 2609Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2607.290 kb on + strand, within DvMF_2092at 2607.372 kb on - strand, within DvMF_2092at 2607.495 kb on + strand, within DvMF_2092at 2607.534 kb on - strand, within DvMF_2092at 2607.560 kb on + strand, within DvMF_2092at 2607.851 kb on - strand, within DvMF_2092at 2607.853 kb on + strand, within DvMF_2092at 2607.853 kb on + strand, within DvMF_2092at 2608.092 kb on + strandat 2608.177 kb on + strandat 2608.222 kb on + strandat 2608.229 kb on + strandat 2608.587 kb on - strandat 2608.664 kb on - strandat 2608.670 kb on - strandat 2608.710 kb on - strandat 2608.891 kb on - strand, within DvMF_2094at 2609.164 kb on + strand, within DvMF_2094at 2609.268 kb on + strand, within DvMF_2094at 2609.342 kb on + strand, within DvMF_2094

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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2,607,290 + DvMF_2092 0.39 -0.9
2,607,372 - DvMF_2092 0.45 -0.5
2,607,495 + DvMF_2092 0.53 -0.2
2,607,534 - DvMF_2092 0.56 -0.5
2,607,560 + DvMF_2092 0.58 +0.4
2,607,851 - DvMF_2092 0.78 -0.5
2,607,853 + DvMF_2092 0.78 -1.2
2,607,853 + DvMF_2092 0.78 -0.1
2,608,092 + +2.9
2,608,177 + -1.2
2,608,222 + -0.6
2,608,229 + -0.6
2,608,587 - -2.4
2,608,664 - -0.7
2,608,670 - -0.7
2,608,710 - -0.0
2,608,891 - DvMF_2094 0.13 -0.9
2,609,164 + DvMF_2094 0.24 -0.2
2,609,268 + DvMF_2094 0.28 +1.4
2,609,342 + DvMF_2094 0.31 -1.5

Or see this region's nucleotide sequence