Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1983

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1982 and DvMF_1983 are separated by 70 nucleotidesDvMF_1983 and DvMF_1984 are separated by 607 nucleotides DvMF_1982: DvMF_1982 - multi-sensor hybrid histidine kinase (RefSeq), at 2,451,196 to 2,454,372 _1982 DvMF_1983: DvMF_1983 - Phosphoglycolate phosphatase (RefSeq), at 2,454,443 to 2,455,216 _1983 DvMF_1984: DvMF_1984 - protein of unknown function DUF81 (RefSeq), at 2,455,824 to 2,457,071 _1984 Position (kb) 2454 2455 2456Strain fitness (log2 ratio) -3 -2 -1 0 1at 2453.771 kb on + strand, within DvMF_1982at 2453.896 kb on + strand, within DvMF_1982at 2453.904 kb on - strand, within DvMF_1982at 2453.917 kb on + strand, within DvMF_1982at 2453.963 kb on + strand, within DvMF_1982at 2453.963 kb on + strand, within DvMF_1982at 2454.048 kb on + strand, within DvMF_1982at 2454.156 kb on + strandat 2454.569 kb on + strand, within DvMF_1983at 2454.858 kb on - strand, within DvMF_1983at 2454.897 kb on + strand, within DvMF_1983at 2455.255 kb on - strandat 2455.255 kb on - strandat 2455.269 kb on - strandat 2455.274 kb on - strandat 2455.386 kb on + strandat 2455.542 kb on - strandat 2455.542 kb on - strandat 2455.775 kb on - strandat 2455.782 kb on + strandat 2455.821 kb on + strandat 2456.103 kb on + strand, within DvMF_1984at 2456.163 kb on - strand, within DvMF_1984at 2456.180 kb on - strand, within DvMF_1984

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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2,453,771 + DvMF_1982 0.81 -0.1
2,453,896 + DvMF_1982 0.85 +0.6
2,453,904 - DvMF_1982 0.85 -1.6
2,453,917 + DvMF_1982 0.86 -3.0
2,453,963 + DvMF_1982 0.87 +0.0
2,453,963 + DvMF_1982 0.87 -1.1
2,454,048 + DvMF_1982 0.90 -2.2
2,454,156 + -1.3
2,454,569 + DvMF_1983 0.16 +1.6
2,454,858 - DvMF_1983 0.54 -0.8
2,454,897 + DvMF_1983 0.59 +0.2
2,455,255 - -0.7
2,455,255 - -1.0
2,455,269 - -0.3
2,455,274 - -1.1
2,455,386 + +0.6
2,455,542 - -0.6
2,455,542 - -0.3
2,455,775 - -0.8
2,455,782 + -1.1
2,455,821 + -1.0
2,456,103 + DvMF_1984 0.22 -0.5
2,456,163 - DvMF_1984 0.27 -0.4
2,456,180 - DvMF_1984 0.29 -0.9

Or see this region's nucleotide sequence