Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1922
Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Vancomycin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,367,572 | - | DvMF_1921 | 0.35 | -0.3 | |
2,367,956 | - | DvMF_1921 | 0.65 | -1.3 | |
2,368,722 | - | -1.3 | |||
2,368,843 | - | DvMF_1922 | 0.11 | -0.5 | |
2,368,891 | + | DvMF_1922 | 0.13 | -0.8 | |
2,369,275 | + | DvMF_1922 | 0.27 | -0.4 | |
2,369,500 | - | DvMF_1922 | 0.35 | -0.6 | |
2,369,603 | - | DvMF_1922 | 0.39 | +0.2 | |
2,369,797 | - | DvMF_1922 | 0.46 | -2.0 | |
2,369,864 | - | DvMF_1922 | 0.49 | -0.7 | |
2,369,969 | + | DvMF_1922 | 0.53 | -1.0 | |
2,369,990 | - | DvMF_1922 | 0.53 | -1.6 | |
2,370,033 | + | DvMF_1922 | 0.55 | -1.0 | |
2,370,072 | - | DvMF_1922 | 0.56 | -3.3 | |
2,370,240 | + | DvMF_1922 | 0.63 | -0.8 | |
2,370,325 | + | DvMF_1922 | 0.66 | -1.2 | |
2,370,398 | + | DvMF_1922 | 0.68 | -1.0 | |
2,370,476 | + | DvMF_1922 | 0.71 | -0.8 | |
2,370,730 | + | DvMF_1922 | 0.81 | -1.0 | |
2,370,730 | + | DvMF_1922 | 0.81 | +0.0 | |
2,370,771 | - | DvMF_1922 | 0.82 | -1.3 | |
2,370,855 | - | DvMF_1922 | 0.85 | -0.1 | |
2,370,954 | - | DvMF_1922 | 0.89 | -0.4 | |
2,371,108 | - | -0.7 | |||
2,371,108 | - | -0.3 | |||
2,371,141 | - | -0.5 | |||
2,371,212 | + | +0.8 | |||
2,371,393 | + | DvMF_1923 | 0.13 | -3.7 | |
2,372,116 | - | DvMF_1923 | 0.75 | +0.5 |
Or see this region's nucleotide sequence