Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1839
Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Vancomycin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,247,916 | - | DvMF_1838 | 0.37 | -0.7 | |
2,248,023 | + | DvMF_1838 | 0.44 | -3.5 | |
2,248,144 | + | DvMF_1838 | 0.53 | -0.9 | |
2,248,152 | - | DvMF_1838 | 0.53 | -0.7 | |
2,248,157 | - | DvMF_1838 | 0.53 | -0.4 | |
2,248,235 | - | DvMF_1838 | 0.59 | +0.2 | |
2,248,274 | + | DvMF_1838 | 0.61 | -1.7 | |
2,248,302 | + | DvMF_1838 | 0.63 | -1.5 | |
2,248,341 | + | DvMF_1838 | 0.66 | -0.9 | |
2,248,421 | - | DvMF_1838 | 0.71 | -1.3 | |
2,248,436 | - | DvMF_1838 | 0.72 | -1.2 | |
2,248,728 | - | -1.5 | |||
2,248,834 | + | -1.1 | |||
2,248,841 | - | -0.8 | |||
2,249,217 | - | DvMF_1839 | 0.28 | +3.3 | |
2,249,398 | - | DvMF_1839 | 0.44 | -0.5 | |
2,249,484 | + | DvMF_1839 | 0.51 | -0.3 | |
2,249,484 | + | DvMF_1839 | 0.51 | +0.2 | |
2,249,492 | - | DvMF_1839 | 0.52 | -1.3 | |
2,249,492 | - | DvMF_1839 | 0.52 | -0.3 | |
2,249,750 | + | DvMF_1839 | 0.75 | -1.4 | |
2,249,816 | + | DvMF_1839 | 0.80 | -1.1 | |
2,249,818 | - | DvMF_1839 | 0.81 | -2.5 | |
2,249,828 | - | DvMF_1839 | 0.81 | -0.4 | |
2,249,906 | + | DvMF_1839 | 0.88 | -0.4 | |
2,250,041 | - | +0.9 | |||
2,250,780 | - | DvMF_1840 | 0.36 | -0.1 | |
2,250,889 | + | DvMF_1840 | 0.45 | +0.3 | |
2,250,960 | + | DvMF_1840 | 0.51 | -0.2 |
Or see this region's nucleotide sequence