Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1730 and DvMF_1731 are separated by 330 nucleotides DvMF_1731 and DvMF_1732 overlap by 4 nucleotides DvMF_1732 and DvMF_1733 are separated by 11 nucleotides
DvMF_1730: DvMF_1730 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,114,641 to 2,116,164
_1730
DvMF_1731: DvMF_1731 - cytochrome c class III (RefSeq), at 2,116,495 to 2,116,899
_1731
DvMF_1732: DvMF_1732 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,116,896 to 2,117,864
_1732
DvMF_1733: DvMF_1733 - nickel-dependent hydrogenase large subunit (RefSeq), at 2,117,876 to 2,119,525
_1733
Position (kb)
2116
2117
2118 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2115.922 kb on - strand, within DvMF_1730 at 2116.113 kb on + strand at 2116.701 kb on - strand, within DvMF_1731 at 2116.711 kb on - strand, within DvMF_1731 at 2116.725 kb on - strand, within DvMF_1731 at 2117.132 kb on - strand, within DvMF_1732 at 2117.351 kb on + strand, within DvMF_1732 at 2117.534 kb on + strand, within DvMF_1732 at 2117.577 kb on - strand, within DvMF_1732 at 2117.577 kb on - strand, within DvMF_1732 at 2117.585 kb on + strand, within DvMF_1732 at 2117.701 kb on + strand, within DvMF_1732 at 2117.709 kb on - strand, within DvMF_1732 at 2117.723 kb on + strand, within DvMF_1732 at 2117.778 kb on + strand at 2117.817 kb on - strand at 2117.823 kb on - strand at 2117.926 kb on + strand at 2118.052 kb on + strand, within DvMF_1733 at 2118.077 kb on - strand, within DvMF_1733 at 2118.133 kb on + strand, within DvMF_1733 at 2118.187 kb on + strand, within DvMF_1733 at 2118.291 kb on + strand, within DvMF_1733 at 2118.665 kb on + strand, within DvMF_1733 at 2118.689 kb on - strand, within DvMF_1733
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 2,115,922 - DvMF_1730 0.84 -0.7 2,116,113 + -1.4 2,116,701 - DvMF_1731 0.51 +1.0 2,116,711 - DvMF_1731 0.53 -1.0 2,116,725 - DvMF_1731 0.57 -0.8 2,117,132 - DvMF_1732 0.24 -1.4 2,117,351 + DvMF_1732 0.47 -2.1 2,117,534 + DvMF_1732 0.66 -0.9 2,117,577 - DvMF_1732 0.70 -1.4 2,117,577 - DvMF_1732 0.70 -0.7 2,117,585 + DvMF_1732 0.71 -1.2 2,117,701 + DvMF_1732 0.83 +0.0 2,117,709 - DvMF_1732 0.84 -0.6 2,117,723 + DvMF_1732 0.85 -2.5 2,117,778 + +0.3 2,117,817 - -0.6 2,117,823 - -3.1 2,117,926 + -0.4 2,118,052 + DvMF_1733 0.11 +0.6 2,118,077 - DvMF_1733 0.12 -0.6 2,118,133 + DvMF_1733 0.16 +1.2 2,118,187 + DvMF_1733 0.19 +0.1 2,118,291 + DvMF_1733 0.25 +1.0 2,118,665 + DvMF_1733 0.48 +0.6 2,118,689 - DvMF_1733 0.49 -0.8
Or see this region's nucleotide sequence