Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1590

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1589 and DvMF_1590 are separated by 557 nucleotidesDvMF_1590 and DvMF_1591 are separated by 242 nucleotides DvMF_1589: DvMF_1589 - ABC transporter related (RefSeq), at 1,958,723 to 1,959,787 _1589 DvMF_1590: DvMF_1590 - glutamine synthetase catalytic region (RefSeq), at 1,960,345 to 1,962,525 _1590 DvMF_1591: DvMF_1591 - hypothetical protein (RefSeq), at 1,962,768 to 1,963,142 _1591 Position (kb) 1960 1961 1962 1963Strain fitness (log2 ratio) -2 -1 0 1at 1959.566 kb on + strand, within DvMF_1589at 1959.681 kb on + strandat 1959.725 kb on + strandat 1959.768 kb on + strandat 1959.890 kb on - strandat 1959.951 kb on + strandat 1962.525 kb on + strandat 1962.990 kb on - strand, within DvMF_1591at 1963.010 kb on - strand, within DvMF_1591at 1963.118 kb on - strandat 1963.137 kb on + strandat 1963.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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1,959,566 + DvMF_1589 0.79 -0.5
1,959,681 + -1.6
1,959,725 + -1.2
1,959,768 + -1.2
1,959,890 - +0.3
1,959,951 + -0.3
1,962,525 + -0.7
1,962,990 - DvMF_1591 0.59 -2.2
1,963,010 - DvMF_1591 0.65 -1.0
1,963,118 - +0.1
1,963,137 + -2.1
1,963,359 + -1.2

Or see this region's nucleotide sequence