Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1584
Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Vancomycin 1 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,952,352 | - | DvMF_1583 | 0.13 | -0.5 | |
1,952,393 | - | DvMF_1583 | 0.18 | -0.5 | |
1,952,393 | - | DvMF_1583 | 0.18 | -2.0 | |
1,952,398 | - | DvMF_1583 | 0.19 | -1.4 | |
1,952,403 | - | DvMF_1583 | 0.20 | -0.3 | |
1,952,443 | + | DvMF_1583 | 0.25 | -0.6 | |
1,952,443 | + | DvMF_1583 | 0.25 | -0.3 | |
1,952,516 | - | DvMF_1583 | 0.35 | -0.9 | |
1,952,516 | - | DvMF_1583 | 0.35 | -0.8 | |
1,952,610 | - | DvMF_1583 | 0.48 | -0.9 | |
1,952,618 | + | DvMF_1583 | 0.49 | -0.6 | |
1,952,803 | - | DvMF_1583 | 0.75 | +1.0 | |
1,952,919 | - | +0.1 | |||
1,952,952 | + | -1.2 | |||
1,953,141 | + | DvMF_1584 | 0.23 | -2.0 | |
1,953,150 | - | DvMF_1584 | 0.25 | -3.4 | |
1,953,190 | + | DvMF_1584 | 0.30 | -0.8 | |
1,953,263 | - | DvMF_1584 | 0.41 | -0.6 | |
1,953,324 | - | DvMF_1584 | 0.49 | +1.0 | |
1,953,351 | + | DvMF_1584 | 0.53 | -0.8 | |
1,953,532 | - | DvMF_1584 | 0.79 | -0.8 | |
1,953,649 | - | -0.4 | |||
1,953,723 | - | -0.8 | |||
1,953,757 | - | -1.2 | |||
1,953,935 | + | DvMF_1585 | 0.33 | -0.4 | |
1,954,248 | - | DvMF_1585 | 0.81 | -1.4 | |
1,954,476 | - | +0.1 | |||
1,954,595 | + | -1.6 | |||
1,954,663 | + | -0.6 |
Or see this region's nucleotide sequence