Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1501 and DvMF_1502 are separated by 242 nucleotides DvMF_1502 and DvMF_1503 overlap by 4 nucleotides DvMF_1503 and DvMF_1504 are separated by 1 nucleotides
DvMF_1501: DvMF_1501 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,852,305 to 1,854,350
_1501
DvMF_1502: DvMF_1502 - protein of unknown function DUF330 (RefSeq), at 1,854,593 to 1,855,336
_1502
DvMF_1503: DvMF_1503 - Mammalian cell entry related domain protein (RefSeq), at 1,855,333 to 1,856,256
_1503
DvMF_1504: DvMF_1504 - ABC transporter related (RefSeq), at 1,856,258 to 1,857,109
_1504
Position (kb)
1854
1855
1856 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1853.633 kb on + strand, within DvMF_1501 at 1853.755 kb on + strand, within DvMF_1501 at 1854.175 kb on - strand at 1854.270 kb on - strand at 1854.279 kb on + strand at 1854.307 kb on - strand at 1854.448 kb on - strand at 1854.552 kb on + strand at 1854.552 kb on + strand at 1854.736 kb on - strand, within DvMF_1502 at 1854.758 kb on - strand, within DvMF_1502 at 1854.803 kb on + strand, within DvMF_1502 at 1855.164 kb on + strand, within DvMF_1502 at 1855.614 kb on - strand, within DvMF_1503 at 1855.678 kb on - strand, within DvMF_1503 at 1855.901 kb on - strand, within DvMF_1503 at 1855.972 kb on - strand, within DvMF_1503 at 1856.067 kb on + strand, within DvMF_1503 at 1856.067 kb on + strand, within DvMF_1503 at 1856.317 kb on + strand at 1856.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 1,853,633 + DvMF_1501 0.65 -2.5 1,853,755 + DvMF_1501 0.71 -0.2 1,854,175 - -0.9 1,854,270 - -0.1 1,854,279 + +0.7 1,854,307 - -1.6 1,854,448 - -0.4 1,854,552 + -1.2 1,854,552 + -0.7 1,854,736 - DvMF_1502 0.19 -2.2 1,854,758 - DvMF_1502 0.22 -0.2 1,854,803 + DvMF_1502 0.28 +0.2 1,855,164 + DvMF_1502 0.77 -0.0 1,855,614 - DvMF_1503 0.30 -0.4 1,855,678 - DvMF_1503 0.37 -0.9 1,855,901 - DvMF_1503 0.61 -0.2 1,855,972 - DvMF_1503 0.69 -3.4 1,856,067 + DvMF_1503 0.79 -1.2 1,856,067 + DvMF_1503 0.79 +1.3 1,856,317 + +0.4 1,856,325 - -0.8
Or see this region's nucleotide sequence