Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1491

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1490 and DvMF_1491 are separated by 4 nucleotidesDvMF_1491 and DvMF_1492 are separated by 325 nucleotides DvMF_1490: DvMF_1490 - Nitrite reductase (cytochrome; ammonia-forming) (RefSeq), at 1,828,105 to 1,829,694 _1490 DvMF_1491: DvMF_1491 - cytochrome c nitrite reductase small subunit (RefSeq), at 1,829,699 to 1,830,178 _1491 DvMF_1492: DvMF_1492 - multi-sensor hybrid histidine kinase (RefSeq), at 1,830,504 to 1,833,593 _1492 Position (kb) 1829 1830 1831Strain fitness (log2 ratio) -2 -1 0 1at 1828.708 kb on + strand, within DvMF_1490at 1828.820 kb on + strand, within DvMF_1490at 1828.820 kb on + strand, within DvMF_1490at 1828.861 kb on - strand, within DvMF_1490at 1828.885 kb on - strand, within DvMF_1490at 1828.919 kb on + strand, within DvMF_1490at 1828.927 kb on - strand, within DvMF_1490at 1829.044 kb on - strand, within DvMF_1490at 1829.044 kb on - strand, within DvMF_1490at 1829.088 kb on + strand, within DvMF_1490at 1829.309 kb on + strand, within DvMF_1490at 1829.643 kb on - strandat 1829.886 kb on + strand, within DvMF_1491at 1829.896 kb on + strand, within DvMF_1491at 1829.921 kb on - strand, within DvMF_1491at 1830.007 kb on - strand, within DvMF_1491at 1830.490 kb on + strandat 1830.786 kb on + strandat 1830.839 kb on + strand, within DvMF_1492at 1830.847 kb on - strand, within DvMF_1492at 1831.167 kb on + strand, within DvMF_1492

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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1,828,708 + DvMF_1490 0.38 -0.3
1,828,820 + DvMF_1490 0.45 -0.5
1,828,820 + DvMF_1490 0.45 -1.1
1,828,861 - DvMF_1490 0.48 -0.1
1,828,885 - DvMF_1490 0.49 +0.1
1,828,919 + DvMF_1490 0.51 -1.1
1,828,927 - DvMF_1490 0.52 -1.4
1,829,044 - DvMF_1490 0.59 -0.5
1,829,044 - DvMF_1490 0.59 -1.1
1,829,088 + DvMF_1490 0.62 -0.4
1,829,309 + DvMF_1490 0.76 -0.7
1,829,643 - -0.3
1,829,886 + DvMF_1491 0.39 -1.4
1,829,896 + DvMF_1491 0.41 -0.3
1,829,921 - DvMF_1491 0.46 -0.7
1,830,007 - DvMF_1491 0.64 -1.7
1,830,490 + -1.2
1,830,786 + -0.3
1,830,839 + DvMF_1492 0.11 -1.8
1,830,847 - DvMF_1492 0.11 -1.1
1,831,167 + DvMF_1492 0.21 -0.3

Or see this region's nucleotide sequence