Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1407

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1405 and DvMF_1406 are separated by 9 nucleotidesDvMF_1406 and DvMF_1407 are separated by 21 nucleotidesDvMF_1407 and DvMF_1408 are separated by 272 nucleotides DvMF_1405: DvMF_1405 - hypothetical protein (RefSeq), at 1,718,357 to 1,718,824 _1405 DvMF_1406: DvMF_1406 - OmpA/MotB domain protein (RefSeq), at 1,718,834 to 1,719,418 _1406 DvMF_1407: DvMF_1407 - metal dependent phosphohydrolase (RefSeq), at 1,719,440 to 1,721,515 _1407 DvMF_1408: DvMF_1408 - chorismate synthase (RefSeq), at 1,721,788 to 1,722,849 _1408 Position (kb) 1719 1720 1721 1722Strain fitness (log2 ratio) -3 -2 -1 0 1at 1718.642 kb on + strand, within DvMF_1405at 1718.709 kb on - strand, within DvMF_1405at 1718.845 kb on + strandat 1718.865 kb on + strandat 1718.896 kb on - strand, within DvMF_1406at 1718.958 kb on + strand, within DvMF_1406at 1719.024 kb on + strand, within DvMF_1406at 1719.470 kb on - strandat 1719.566 kb on - strandat 1719.598 kb on + strandat 1719.878 kb on - strand, within DvMF_1407at 1720.075 kb on - strand, within DvMF_1407at 1720.156 kb on + strand, within DvMF_1407at 1720.169 kb on - strand, within DvMF_1407at 1720.238 kb on - strand, within DvMF_1407at 1720.276 kb on - strand, within DvMF_1407at 1720.437 kb on + strand, within DvMF_1407at 1720.445 kb on - strand, within DvMF_1407at 1720.476 kb on + strand, within DvMF_1407at 1720.484 kb on - strand, within DvMF_1407at 1720.526 kb on - strand, within DvMF_1407at 1720.680 kb on + strand, within DvMF_1407at 1720.685 kb on + strand, within DvMF_1407at 1720.698 kb on - strand, within DvMF_1407at 1720.870 kb on + strand, within DvMF_1407at 1721.174 kb on - strand, within DvMF_1407at 1721.736 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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1,718,642 + DvMF_1405 0.61 -2.4
1,718,709 - DvMF_1405 0.75 -1.3
1,718,845 + -0.5
1,718,865 + +0.5
1,718,896 - DvMF_1406 0.11 -1.6
1,718,958 + DvMF_1406 0.21 -1.1
1,719,024 + DvMF_1406 0.32 -0.6
1,719,470 - -1.9
1,719,566 - -2.8
1,719,598 + -0.7
1,719,878 - DvMF_1407 0.21 +0.6
1,720,075 - DvMF_1407 0.31 -0.9
1,720,156 + DvMF_1407 0.34 +0.4
1,720,169 - DvMF_1407 0.35 -0.9
1,720,238 - DvMF_1407 0.38 -1.0
1,720,276 - DvMF_1407 0.40 +0.7
1,720,437 + DvMF_1407 0.48 +0.0
1,720,445 - DvMF_1407 0.48 -2.2
1,720,476 + DvMF_1407 0.50 +0.1
1,720,484 - DvMF_1407 0.50 -0.8
1,720,526 - DvMF_1407 0.52 -0.8
1,720,680 + DvMF_1407 0.60 +0.8
1,720,685 + DvMF_1407 0.60 -0.6
1,720,698 - DvMF_1407 0.61 -1.5
1,720,870 + DvMF_1407 0.69 +0.6
1,721,174 - DvMF_1407 0.84 -0.1
1,721,736 - -1.1

Or see this region's nucleotide sequence