Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1397

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1396 and DvMF_1397 are separated by 320 nucleotidesDvMF_1397 and DvMF_1398 are separated by 264 nucleotides DvMF_1396: DvMF_1396 - flagellar motor switch protein FliM (RefSeq), at 1,702,796 to 1,703,776 _1396 DvMF_1397: DvMF_1397 - hypothetical protein (RefSeq), at 1,704,097 to 1,704,564 _1397 DvMF_1398: DvMF_1398 - ATP-dependent reduction of co(II)balamin (RamA-like) (from data), at 1,704,829 to 1,706,886 _1398 Position (kb) 1704 1705Strain fitness (log2 ratio) -1 0 1 2 3at 1703.167 kb on + strand, within DvMF_1396at 1703.562 kb on + strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.570 kb on - strand, within DvMF_1396at 1703.640 kb on + strand, within DvMF_1396at 1703.648 kb on - strand, within DvMF_1396at 1703.847 kb on - strandat 1703.930 kb on + strandat 1704.111 kb on + strandat 1704.119 kb on - strandat 1704.360 kb on + strand, within DvMF_1397at 1704.368 kb on + strand, within DvMF_1397at 1704.400 kb on - strand, within DvMF_1397at 1704.400 kb on - strand, within DvMF_1397at 1704.574 kb on + strandat 1704.939 kb on + strandat 1704.956 kb on - strandat 1705.066 kb on + strand, within DvMF_1398at 1705.431 kb on + strand, within DvMF_1398

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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1,703,167 + DvMF_1396 0.38 -0.5
1,703,562 + DvMF_1396 0.78 -0.1
1,703,570 - DvMF_1396 0.79 -0.3
1,703,570 - DvMF_1396 0.79 +0.3
1,703,570 - DvMF_1396 0.79 -1.0
1,703,570 - DvMF_1396 0.79 +0.2
1,703,570 - DvMF_1396 0.79 +0.9
1,703,640 + DvMF_1396 0.86 +0.7
1,703,648 - DvMF_1396 0.87 +0.6
1,703,847 - -0.3
1,703,930 + -0.5
1,704,111 + -0.6
1,704,119 - -0.7
1,704,360 + DvMF_1397 0.56 -0.0
1,704,368 + DvMF_1397 0.58 -0.3
1,704,400 - DvMF_1397 0.65 -0.5
1,704,400 - DvMF_1397 0.65 -0.3
1,704,574 + -0.8
1,704,939 + +0.3
1,704,956 - +0.6
1,705,066 + DvMF_1398 0.12 +3.0
1,705,431 + DvMF_1398 0.29 -1.1

Or see this region's nucleotide sequence