Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1151 and DvMF_R0035 are separated by 218 nucleotides DvMF_R0035 and DvMF_1152 are separated by 345 nucleotides DvMF_1152 and DvMF_1153 are separated by 220 nucleotides
DvMF_1151: DvMF_1151 - transcriptional regulator, LysR family (RefSeq), at 1,411,686 to 1,412,609
_1151
DvMF_R0035: DvMF_R0035 - tRNA-Leu (RefSeq), at 1,412,828 to 1,412,914
_R0035
DvMF_1152: DvMF_1152 - Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme (RefSeq), at 1,413,260 to 1,414,408
_1152
DvMF_1153: DvMF_1153 - Phenylacetate--CoA ligase (RefSeq), at 1,414,629 to 1,415,933
_1153
Position (kb)
1413
1414
1415 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1412.327 kb on - strand, within DvMF_1151 at 1412.405 kb on + strand, within DvMF_1151 at 1412.478 kb on + strand, within DvMF_1151 at 1412.603 kb on + strand at 1412.611 kb on - strand at 1412.767 kb on + strand at 1412.780 kb on - strand at 1413.125 kb on - strand at 1413.141 kb on - strand at 1413.496 kb on - strand, within DvMF_1152 at 1413.582 kb on - strand, within DvMF_1152 at 1413.599 kb on + strand, within DvMF_1152 at 1413.799 kb on + strand, within DvMF_1152 at 1413.901 kb on + strand, within DvMF_1152 at 1414.027 kb on + strand, within DvMF_1152 at 1414.096 kb on - strand, within DvMF_1152 at 1414.108 kb on + strand, within DvMF_1152 at 1414.249 kb on - strand, within DvMF_1152 at 1414.705 kb on + strand at 1414.875 kb on - strand, within DvMF_1153 at 1414.935 kb on - strand, within DvMF_1153 at 1415.160 kb on - strand, within DvMF_1153 at 1415.264 kb on - strand, within DvMF_1153 at 1415.293 kb on + strand, within DvMF_1153 at 1415.331 kb on - strand, within DvMF_1153 at 1415.358 kb on + strand, within DvMF_1153 at 1415.391 kb on - strand, within DvMF_1153
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 1,412,327 - DvMF_1151 0.69 -0.7 1,412,405 + DvMF_1151 0.78 -0.8 1,412,478 + DvMF_1151 0.86 -0.9 1,412,603 + -1.0 1,412,611 - +0.5 1,412,767 + -0.4 1,412,780 - -1.4 1,413,125 - -0.5 1,413,141 - -0.3 1,413,496 - DvMF_1152 0.21 -0.9 1,413,582 - DvMF_1152 0.28 -1.2 1,413,599 + DvMF_1152 0.30 -0.9 1,413,799 + DvMF_1152 0.47 -1.0 1,413,901 + DvMF_1152 0.56 -0.8 1,414,027 + DvMF_1152 0.67 -3.2 1,414,096 - DvMF_1152 0.73 -0.7 1,414,108 + DvMF_1152 0.74 -1.7 1,414,249 - DvMF_1152 0.86 +0.6 1,414,705 + -1.3 1,414,875 - DvMF_1153 0.19 -1.4 1,414,935 - DvMF_1153 0.23 +0.8 1,415,160 - DvMF_1153 0.41 -0.3 1,415,264 - DvMF_1153 0.49 -1.1 1,415,293 + DvMF_1153 0.51 -2.9 1,415,331 - DvMF_1153 0.54 -0.9 1,415,358 + DvMF_1153 0.56 -0.2 1,415,391 - DvMF_1153 0.58 -1.5
Or see this region's nucleotide sequence