Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1065 and DvMF_1066 are separated by 3 nucleotides DvMF_1066 and DvMF_1067 overlap by 4 nucleotides DvMF_1067 and DvMF_1068 are separated by 77 nucleotides
DvMF_1065: DvMF_1065 - hypothetical protein (RefSeq), at 1,305,752 to 1,307,830
_1065
DvMF_1066: DvMF_1066 - hypothetical protein (RefSeq), at 1,307,834 to 1,308,430
_1066
DvMF_1067: DvMF_1067 - hypothetical protein (RefSeq), at 1,308,427 to 1,309,047
_1067
DvMF_1068: DvMF_1068 - hypothetical protein (RefSeq), at 1,309,125 to 1,309,523
_1068
Position (kb)
1307
1308
1309 Strain fitness (log2 ratio)
-2
-1
0
1 at 1306.894 kb on + strand, within DvMF_1065 at 1307.128 kb on - strand, within DvMF_1065 at 1307.184 kb on + strand, within DvMF_1065 at 1307.212 kb on - strand, within DvMF_1065 at 1307.247 kb on - strand, within DvMF_1065 at 1307.333 kb on - strand, within DvMF_1065 at 1307.443 kb on + strand, within DvMF_1065 at 1307.471 kb on + strand, within DvMF_1065 at 1307.506 kb on - strand, within DvMF_1065 at 1307.602 kb on + strand, within DvMF_1065 at 1307.999 kb on + strand, within DvMF_1066 at 1308.084 kb on + strand, within DvMF_1066 at 1308.156 kb on - strand, within DvMF_1066 at 1308.312 kb on + strand, within DvMF_1066 at 1308.383 kb on + strand at 1308.644 kb on + strand, within DvMF_1067 at 1308.721 kb on + strand, within DvMF_1067 at 1308.729 kb on + strand, within DvMF_1067 at 1309.064 kb on - strand at 1309.112 kb on - strand at 1309.361 kb on + strand, within DvMF_1068
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 1,306,894 + DvMF_1065 0.55 -0.9 1,307,128 - DvMF_1065 0.66 -1.0 1,307,184 + DvMF_1065 0.69 -1.3 1,307,212 - DvMF_1065 0.70 -0.9 1,307,247 - DvMF_1065 0.72 -0.6 1,307,333 - DvMF_1065 0.76 -0.7 1,307,443 + DvMF_1065 0.81 -2.6 1,307,471 + DvMF_1065 0.83 +0.1 1,307,506 - DvMF_1065 0.84 -1.1 1,307,602 + DvMF_1065 0.89 -1.1 1,307,999 + DvMF_1066 0.28 -1.7 1,308,084 + DvMF_1066 0.42 -2.2 1,308,156 - DvMF_1066 0.54 -1.2 1,308,312 + DvMF_1066 0.80 -1.4 1,308,383 + -1.2 1,308,644 + DvMF_1067 0.35 -1.4 1,308,721 + DvMF_1067 0.47 -1.6 1,308,729 + DvMF_1067 0.49 -1.6 1,309,064 - -0.7 1,309,112 - -1.5 1,309,361 + DvMF_1068 0.59 -1.3
Or see this region's nucleotide sequence