Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1038 and DvMF_1039 are separated by 32 nucleotides DvMF_1039 and DvMF_1040 are separated by 455 nucleotides
DvMF_1038: DvMF_1038 - twitching motility protein (RefSeq), at 1,260,087 to 1,261,205
_1038
DvMF_1039: DvMF_1039 - Type II secretory pathway component ExeA (predicted ATPase)-like protein (RefSeq), at 1,261,238 to 1,263,280
_1039
DvMF_1040: DvMF_1040 - PhoH family protein (RefSeq), at 1,263,736 to 1,265,313
_1040
Position (kb)
1261
1262
1263
1264 Strain fitness (log2 ratio)
-2
-1
0
1 at 1260.332 kb on - strand, within DvMF_1038 at 1260.549 kb on - strand, within DvMF_1038 at 1260.604 kb on + strand, within DvMF_1038 at 1260.663 kb on + strand, within DvMF_1038 at 1260.717 kb on - strand, within DvMF_1038 at 1260.784 kb on - strand, within DvMF_1038 at 1260.993 kb on - strand, within DvMF_1038 at 1261.044 kb on - strand, within DvMF_1038 at 1261.095 kb on + strand at 1261.511 kb on - strand, within DvMF_1039 at 1261.797 kb on + strand, within DvMF_1039 at 1261.830 kb on + strand, within DvMF_1039 at 1261.883 kb on + strand, within DvMF_1039 at 1261.955 kb on - strand, within DvMF_1039 at 1262.011 kb on + strand, within DvMF_1039 at 1262.222 kb on - strand, within DvMF_1039 at 1262.269 kb on - strand, within DvMF_1039 at 1262.274 kb on - strand, within DvMF_1039 at 1262.359 kb on + strand, within DvMF_1039 at 1262.407 kb on - strand, within DvMF_1039 at 1262.534 kb on + strand, within DvMF_1039 at 1262.632 kb on - strand, within DvMF_1039 at 1263.123 kb on - strand at 1263.415 kb on - strand at 1263.602 kb on + strand at 1264.221 kb on + strand, within DvMF_1040
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 1,260,332 - DvMF_1038 0.22 -1.5 1,260,549 - DvMF_1038 0.41 -1.5 1,260,604 + DvMF_1038 0.46 -1.1 1,260,663 + DvMF_1038 0.51 +0.2 1,260,717 - DvMF_1038 0.56 +0.9 1,260,784 - DvMF_1038 0.62 -0.0 1,260,993 - DvMF_1038 0.81 -1.5 1,261,044 - DvMF_1038 0.86 -0.2 1,261,095 + -0.3 1,261,511 - DvMF_1039 0.13 -2.2 1,261,797 + DvMF_1039 0.27 -0.4 1,261,830 + DvMF_1039 0.29 -1.5 1,261,883 + DvMF_1039 0.32 +0.2 1,261,955 - DvMF_1039 0.35 -1.5 1,262,011 + DvMF_1039 0.38 -0.5 1,262,222 - DvMF_1039 0.48 -1.0 1,262,269 - DvMF_1039 0.50 -0.9 1,262,274 - DvMF_1039 0.51 +0.3 1,262,359 + DvMF_1039 0.55 -0.1 1,262,407 - DvMF_1039 0.57 -0.5 1,262,534 + DvMF_1039 0.63 -1.0 1,262,632 - DvMF_1039 0.68 -2.0 1,263,123 - -0.5 1,263,415 - +0.4 1,263,602 + -2.1 1,264,221 + DvMF_1040 0.31 -1.6
Or see this region's nucleotide sequence