Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0915 and DvMF_0916 are separated by 89 nucleotides DvMF_0916 and DvMF_0917 are separated by 263 nucleotides DvMF_0917 and DvMF_R0023 are separated by 406 nucleotides DvMF_R0023 and DvMF_R0024 are separated by 105 nucleotides
DvMF_0915: DvMF_0915 - SufBD protein (RefSeq), at 1,100,546 to 1,101,712
_0915
DvMF_0916: DvMF_0916 - YCII-related (RefSeq), at 1,101,802 to 1,102,089
_0916
DvMF_0917: DvMF_0917 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,102,353 to 1,104,161
_0917
DvMF_R0023: DvMF_R0023 - 5S ribosomal RNA (RefSeq), at 1,104,568 to 1,104,682
_R0023
DvMF_R0024: DvMF_R0024 - 23S ribosomal RNA (RefSeq), at 1,104,788 to 1,107,713
_R0024
Position (kb)
1102
1103
1104
1105 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1101.744 kb on + strand at 1101.780 kb on - strand at 1101.979 kb on - strand, within DvMF_0916 at 1102.030 kb on - strand, within DvMF_0916 at 1102.082 kb on - strand at 1102.265 kb on + strand at 1102.481 kb on + strand at 1102.510 kb on - strand at 1102.550 kb on - strand, within DvMF_0917 at 1102.649 kb on + strand, within DvMF_0917 at 1102.906 kb on - strand, within DvMF_0917 at 1103.055 kb on - strand, within DvMF_0917 at 1103.195 kb on - strand, within DvMF_0917 at 1103.341 kb on + strand, within DvMF_0917 at 1103.381 kb on - strand, within DvMF_0917 at 1103.441 kb on - strand, within DvMF_0917 at 1103.494 kb on + strand, within DvMF_0917 at 1103.612 kb on + strand, within DvMF_0917 at 1103.766 kb on + strand, within DvMF_0917 at 1103.783 kb on + strand, within DvMF_0917 at 1103.879 kb on - strand, within DvMF_0917 at 1103.977 kb on - strand, within DvMF_0917 at 1103.979 kb on - strand, within DvMF_0917 at 1104.328 kb on + strand at 1104.389 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 1,101,744 + +0.1 1,101,780 - -0.3 1,101,979 - DvMF_0916 0.61 -1.2 1,102,030 - DvMF_0916 0.79 -1.1 1,102,082 - -0.3 1,102,265 + +0.1 1,102,481 + -0.7 1,102,510 - -1.0 1,102,550 - DvMF_0917 0.11 -0.4 1,102,649 + DvMF_0917 0.16 -2.4 1,102,906 - DvMF_0917 0.31 -0.6 1,103,055 - DvMF_0917 0.39 +0.2 1,103,195 - DvMF_0917 0.47 -0.6 1,103,341 + DvMF_0917 0.55 +0.9 1,103,381 - DvMF_0917 0.57 -1.3 1,103,441 - DvMF_0917 0.60 +0.1 1,103,494 + DvMF_0917 0.63 -0.3 1,103,612 + DvMF_0917 0.70 -2.8 1,103,766 + DvMF_0917 0.78 -0.1 1,103,783 + DvMF_0917 0.79 -1.3 1,103,879 - DvMF_0917 0.84 -1.0 1,103,977 - DvMF_0917 0.90 -0.3 1,103,979 - DvMF_0917 0.90 +0.1 1,104,328 + -1.1 1,104,389 - +0.7
Or see this region's nucleotide sequence