Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0818

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0817 and DvMF_0818 are separated by 108 nucleotidesDvMF_0818 and DvMF_0819 are separated by 115 nucleotidesDvMF_0819 and DvMF_0820 overlap by 11 nucleotides DvMF_0817: DvMF_0817 - Biotin carboxylase (RefSeq), at 985,648 to 987,066 _0817 DvMF_0818: DvMF_0818 - type IV pilus assembly PilZ (RefSeq), at 987,175 to 987,705 _0818 DvMF_0819: DvMF_0819 - OmpA/MotB domain protein (RefSeq), at 987,821 to 988,555 _0819 DvMF_0820: DvMF_0820 - MotA/TolQ/ExbB proton channel (RefSeq), at 988,545 to 989,300 _0820 Position (kb) 987 988Strain fitness (log2 ratio) -1 0 1at 987.179 kb on - strandat 987.323 kb on + strand, within DvMF_0818at 987.428 kb on + strand, within DvMF_0818at 987.538 kb on + strand, within DvMF_0818at 987.740 kb on - strandat 988.279 kb on - strand, within DvMF_0819at 988.295 kb on - strand, within DvMF_0819at 988.435 kb on + strand, within DvMF_0819

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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987,179 - +0.0
987,323 + DvMF_0818 0.28 -1.1
987,428 + DvMF_0818 0.48 -1.0
987,538 + DvMF_0818 0.68 -0.4
987,740 - -1.2
988,279 - DvMF_0819 0.62 -0.6
988,295 - DvMF_0819 0.64 +1.0
988,435 + DvMF_0819 0.84 -0.3

Or see this region's nucleotide sequence