Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiG and DvMF_0801 overlap by 1 nucleotides DvMF_0801 and DvMF_0802 are separated by 433 nucleotides DvMF_0802 and DvMF_0803 are separated by 3 nucleotides
DvMF_0800: thiG - thiazole synthase (RefSeq), at 964,667 to 965,467
thiG
DvMF_0801: DvMF_0801 - thiamine biosynthesis protein ThiS (RefSeq), at 965,467 to 965,667
_0801
DvMF_0802: DvMF_0802 - ABC transporter related (RefSeq), at 966,101 to 967,405
_0802
DvMF_0803: DvMF_0803 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 967,409 to 969,139
_0803
Position (kb) 966
967
968 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 965.230 kb on + strand, within thiG at 965.238 kb on + strand, within thiG at 965.297 kb on + strand, within thiG at 965.317 kb on + strand, within thiG at 965.348 kb on - strand, within thiG at 965.356 kb on + strand, within thiG at 965.356 kb on + strand, within thiG at 965.493 kb on - strand, within DvMF_0801 at 965.525 kb on + strand, within DvMF_0801 at 965.542 kb on - strand, within DvMF_0801 at 965.997 kb on + strand at 966.383 kb on + strand, within DvMF_0802 at 966.561 kb on - strand, within DvMF_0802 at 966.786 kb on + strand, within DvMF_0802 at 966.810 kb on - strand, within DvMF_0802 at 967.030 kb on + strand, within DvMF_0802 at 967.030 kb on + strand, within DvMF_0802 at 967.038 kb on - strand, within DvMF_0802 at 967.048 kb on + strand, within DvMF_0802 at 967.056 kb on - strand, within DvMF_0802 at 967.139 kb on - strand, within DvMF_0802 at 967.156 kb on - strand, within DvMF_0802 at 967.181 kb on - strand, within DvMF_0802 at 967.205 kb on - strand, within DvMF_0802 at 967.210 kb on - strand, within DvMF_0802 at 967.343 kb on - strand at 967.377 kb on - strand at 967.681 kb on + strand, within DvMF_0803 at 967.694 kb on + strand, within DvMF_0803 at 967.735 kb on + strand, within DvMF_0803 at 967.735 kb on + strand, within DvMF_0803 at 967.743 kb on - strand, within DvMF_0803 at 967.868 kb on - strand, within DvMF_0803 at 967.917 kb on + strand, within DvMF_0803 at 967.933 kb on - strand, within DvMF_0803 at 967.982 kb on - strand, within DvMF_0803 at 968.119 kb on - strand, within DvMF_0803 at 968.164 kb on + strand, within DvMF_0803 at 968.251 kb on - strand, within DvMF_0803 at 968.360 kb on - strand, within DvMF_0803 at 968.379 kb on + strand, within DvMF_0803
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 965,230 + thiG DvMF_0800 0.70 -0.3 965,238 + thiG DvMF_0800 0.71 -3.8 965,297 + thiG DvMF_0800 0.79 -0.9 965,317 + thiG DvMF_0800 0.81 -0.6 965,348 - thiG DvMF_0800 0.85 -1.0 965,356 + thiG DvMF_0800 0.86 -0.9 965,356 + thiG DvMF_0800 0.86 -2.2 965,493 - DvMF_0801 0.13 -0.1 965,525 + DvMF_0801 0.29 -1.8 965,542 - DvMF_0801 0.37 -0.6 965,997 + +0.0 966,383 + DvMF_0802 0.22 -0.7 966,561 - DvMF_0802 0.35 -0.8 966,786 + DvMF_0802 0.52 -2.6 966,810 - DvMF_0802 0.54 -0.0 967,030 + DvMF_0802 0.71 -1.2 967,030 + DvMF_0802 0.71 -0.5 967,038 - DvMF_0802 0.72 -0.8 967,048 + DvMF_0802 0.73 -0.8 967,056 - DvMF_0802 0.73 -0.1 967,139 - DvMF_0802 0.80 -1.9 967,156 - DvMF_0802 0.81 -0.0 967,181 - DvMF_0802 0.83 -0.8 967,205 - DvMF_0802 0.85 -2.5 967,210 - DvMF_0802 0.85 -1.3 967,343 - -0.4 967,377 - -0.4 967,681 + DvMF_0803 0.16 -0.7 967,694 + DvMF_0803 0.16 -0.6 967,735 + DvMF_0803 0.19 -0.4 967,735 + DvMF_0803 0.19 -0.3 967,743 - DvMF_0803 0.19 -0.7 967,868 - DvMF_0803 0.27 -1.1 967,917 + DvMF_0803 0.29 -1.1 967,933 - DvMF_0803 0.30 +0.7 967,982 - DvMF_0803 0.33 -0.8 968,119 - DvMF_0803 0.41 -0.4 968,164 + DvMF_0803 0.44 -0.9 968,251 - DvMF_0803 0.49 -0.6 968,360 - DvMF_0803 0.55 -0.9 968,379 + DvMF_0803 0.56 -0.5
Or see this region's nucleotide sequence