Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0749 and DvMF_0750 overlap by 4 nucleotides DvMF_0750 and DvMF_0751 are separated by 43 nucleotides DvMF_0751 and DvMF_0752 are separated by 8 nucleotides DvMF_0752 and DvMF_0753 are separated by 285 nucleotides
DvMF_0749: DvMF_0749 - Baseplate J family protein (RefSeq), at 896,164 to 897,225
_0749
DvMF_0750: DvMF_0750 - hypothetical protein (RefSeq), at 897,222 to 897,791
_0750
DvMF_0751: DvMF_0751 - hypothetical protein (RefSeq), at 897,835 to 899,127
_0751
DvMF_0752: DvMF_0752 - hypothetical protein (RefSeq), at 899,136 to 899,693
_0752
DvMF_0753: DvMF_0753 - hypothetical protein (RefSeq), at 899,979 to 900,185
_0753
Position (kb) 897
898
899
900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 896.968 kb on + strand, within DvMF_0749 at 896.998 kb on + strand, within DvMF_0749 at 897.076 kb on - strand, within DvMF_0749 at 897.245 kb on - strand at 897.479 kb on - strand, within DvMF_0750 at 897.532 kb on + strand, within DvMF_0750 at 897.542 kb on + strand, within DvMF_0750 at 897.545 kb on - strand, within DvMF_0750 at 897.647 kb on - strand, within DvMF_0750 at 897.832 kb on + strand at 897.840 kb on - strand at 897.933 kb on + strand at 897.985 kb on + strand, within DvMF_0751 at 897.990 kb on + strand, within DvMF_0751 at 898.047 kb on + strand, within DvMF_0751 at 898.240 kb on + strand, within DvMF_0751 at 898.270 kb on - strand, within DvMF_0751 at 898.321 kb on + strand, within DvMF_0751 at 898.376 kb on - strand, within DvMF_0751 at 898.376 kb on - strand, within DvMF_0751 at 898.446 kb on - strand, within DvMF_0751 at 898.477 kb on + strand, within DvMF_0751 at 898.604 kb on + strand, within DvMF_0751 at 898.653 kb on + strand, within DvMF_0751 at 898.656 kb on - strand, within DvMF_0751 at 898.727 kb on - strand, within DvMF_0751 at 898.828 kb on - strand, within DvMF_0751 at 898.847 kb on - strand, within DvMF_0751 at 898.862 kb on - strand, within DvMF_0751 at 899.146 kb on - strand at 899.158 kb on - strand at 899.211 kb on - strand, within DvMF_0752 at 899.219 kb on - strand, within DvMF_0752 at 899.248 kb on - strand, within DvMF_0752 at 899.930 kb on - strand at 899.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 896,968 + DvMF_0749 0.76 +0.1 896,998 + DvMF_0749 0.79 -0.6 897,076 - DvMF_0749 0.86 -0.9 897,245 - -0.9 897,479 - DvMF_0750 0.45 -1.0 897,532 + DvMF_0750 0.54 -0.1 897,542 + DvMF_0750 0.56 -3.8 897,545 - DvMF_0750 0.57 -0.9 897,647 - DvMF_0750 0.75 +0.0 897,832 + +0.1 897,840 - -0.6 897,933 + -0.1 897,985 + DvMF_0751 0.12 -4.1 897,990 + DvMF_0751 0.12 -0.6 898,047 + DvMF_0751 0.16 -0.4 898,240 + DvMF_0751 0.31 -0.8 898,270 - DvMF_0751 0.34 -0.9 898,321 + DvMF_0751 0.38 -0.5 898,376 - DvMF_0751 0.42 -0.3 898,376 - DvMF_0751 0.42 -0.2 898,446 - DvMF_0751 0.47 -2.6 898,477 + DvMF_0751 0.50 -0.5 898,604 + DvMF_0751 0.59 -0.4 898,653 + DvMF_0751 0.63 -0.8 898,656 - DvMF_0751 0.63 -0.4 898,727 - DvMF_0751 0.69 -0.6 898,828 - DvMF_0751 0.77 -1.7 898,847 - DvMF_0751 0.78 -2.5 898,862 - DvMF_0751 0.79 -1.1 899,146 - -1.0 899,158 - -0.6 899,211 - DvMF_0752 0.13 -1.6 899,219 - DvMF_0752 0.15 -0.1 899,248 - DvMF_0752 0.20 -0.3 899,930 - +0.5 899,931 - -0.4
Or see this region's nucleotide sequence