Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0641 and DvMF_0642 are separated by 137 nucleotides DvMF_0642 and DvMF_0643 are separated by 604 nucleotides
DvMF_0641: DvMF_0641 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 766,428 to 769,145
_0641
DvMF_0642: DvMF_0642 - molybdopterin binding domain protein (RefSeq), at 769,283 to 770,326
_0642
DvMF_0643: DvMF_0643 - formate dehydrogenase, alpha subunit (RefSeq), at 770,931 to 773,969
_0643
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1 at 768.315 kb on + strand, within DvMF_0641 at 768.346 kb on - strand, within DvMF_0641 at 768.355 kb on - strand, within DvMF_0641 at 768.407 kb on - strand, within DvMF_0641 at 768.466 kb on - strand, within DvMF_0641 at 768.504 kb on - strand, within DvMF_0641 at 768.520 kb on - strand, within DvMF_0641 at 768.683 kb on + strand, within DvMF_0641 at 768.691 kb on - strand, within DvMF_0641 at 768.778 kb on - strand, within DvMF_0641 at 768.895 kb on - strand at 769.233 kb on - strand at 769.743 kb on + strand, within DvMF_0642 at 769.907 kb on + strand, within DvMF_0642 at 770.109 kb on + strand, within DvMF_0642 at 770.206 kb on - strand, within DvMF_0642 at 770.206 kb on - strand, within DvMF_0642 at 770.479 kb on + strand at 770.789 kb on + strand at 770.995 kb on - strand at 771.005 kb on - strand at 771.079 kb on - strand at 771.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 768,315 + DvMF_0641 0.69 -0.8 768,346 - DvMF_0641 0.71 +0.0 768,355 - DvMF_0641 0.71 -0.8 768,407 - DvMF_0641 0.73 -1.4 768,466 - DvMF_0641 0.75 -0.1 768,504 - DvMF_0641 0.76 -1.9 768,520 - DvMF_0641 0.77 -0.4 768,683 + DvMF_0641 0.83 -0.9 768,691 - DvMF_0641 0.83 -0.8 768,778 - DvMF_0641 0.86 -1.2 768,895 - -1.2 769,233 - -1.0 769,743 + DvMF_0642 0.44 -0.8 769,907 + DvMF_0642 0.60 +0.0 770,109 + DvMF_0642 0.79 +0.0 770,206 - DvMF_0642 0.88 -0.0 770,206 - DvMF_0642 0.88 -1.1 770,479 + +0.4 770,789 + +0.4 770,995 - -0.6 771,005 - -0.5 771,079 - -0.7 771,223 - -2.1
Or see this region's nucleotide sequence