Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0640 and DvMF_0641 are separated by 109 nucleotides DvMF_0641 and DvMF_0642 are separated by 137 nucleotides
DvMF_0640: DvMF_0640 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 763,610 to 766,318
_0640
DvMF_0641: DvMF_0641 - aldehyde oxidase and xanthine dehydrogenase molybdopterin binding (RefSeq), at 766,428 to 769,145
_0641
DvMF_0642: DvMF_0642 - molybdopterin binding domain protein (RefSeq), at 769,283 to 770,326
_0642
Position (kb) 766
767
768
769
770 Strain fitness (log2 ratio) -2
-1
0
1
2 at 765.574 kb on + strand, within DvMF_0640 at 765.777 kb on - strand, within DvMF_0640 at 765.885 kb on + strand, within DvMF_0640 at 766.047 kb on + strand, within DvMF_0640 at 766.257 kb on + strand at 766.437 kb on + strand at 766.456 kb on + strand at 766.627 kb on + strand at 766.697 kb on + strand at 767.021 kb on - strand, within DvMF_0641 at 767.081 kb on - strand, within DvMF_0641 at 767.174 kb on - strand, within DvMF_0641 at 767.179 kb on + strand, within DvMF_0641 at 767.194 kb on + strand, within DvMF_0641 at 767.315 kb on - strand, within DvMF_0641 at 767.402 kb on + strand, within DvMF_0641 at 767.592 kb on - strand, within DvMF_0641 at 767.718 kb on - strand, within DvMF_0641 at 767.947 kb on - strand, within DvMF_0641 at 767.958 kb on - strand, within DvMF_0641 at 768.040 kb on - strand, within DvMF_0641 at 768.118 kb on + strand, within DvMF_0641 at 768.138 kb on + strand, within DvMF_0641 at 768.315 kb on + strand, within DvMF_0641 at 768.346 kb on - strand, within DvMF_0641 at 768.355 kb on - strand, within DvMF_0641 at 768.407 kb on - strand, within DvMF_0641 at 768.466 kb on - strand, within DvMF_0641 at 768.504 kb on - strand, within DvMF_0641 at 768.520 kb on - strand, within DvMF_0641 at 768.683 kb on + strand, within DvMF_0641 at 768.691 kb on - strand, within DvMF_0641 at 768.778 kb on - strand, within DvMF_0641 at 768.895 kb on - strand at 769.233 kb on - strand at 769.743 kb on + strand, within DvMF_0642 at 769.907 kb on + strand, within DvMF_0642 at 770.109 kb on + strand, within DvMF_0642
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 765,574 + DvMF_0640 0.72 -0.6 765,777 - DvMF_0640 0.80 -1.6 765,885 + DvMF_0640 0.84 +1.9 766,047 + DvMF_0640 0.90 +1.5 766,257 + -1.9 766,437 + -2.5 766,456 + -0.5 766,627 + -1.1 766,697 + -1.9 767,021 - DvMF_0641 0.22 +0.7 767,081 - DvMF_0641 0.24 -0.6 767,174 - DvMF_0641 0.27 -0.6 767,179 + DvMF_0641 0.28 +0.6 767,194 + DvMF_0641 0.28 -0.5 767,315 - DvMF_0641 0.33 +0.0 767,402 + DvMF_0641 0.36 -1.1 767,592 - DvMF_0641 0.43 -1.2 767,718 - DvMF_0641 0.47 +0.3 767,947 - DvMF_0641 0.56 -1.4 767,958 - DvMF_0641 0.56 +0.2 768,040 - DvMF_0641 0.59 -0.8 768,118 + DvMF_0641 0.62 -0.4 768,138 + DvMF_0641 0.63 -1.0 768,315 + DvMF_0641 0.69 -0.8 768,346 - DvMF_0641 0.71 +0.0 768,355 - DvMF_0641 0.71 -0.8 768,407 - DvMF_0641 0.73 -1.4 768,466 - DvMF_0641 0.75 -0.1 768,504 - DvMF_0641 0.76 -1.9 768,520 - DvMF_0641 0.77 -0.4 768,683 + DvMF_0641 0.83 -0.9 768,691 - DvMF_0641 0.83 -0.8 768,778 - DvMF_0641 0.86 -1.2 768,895 - -1.2 769,233 - -1.0 769,743 + DvMF_0642 0.44 -0.8 769,907 + DvMF_0642 0.60 +0.0 770,109 + DvMF_0642 0.79 +0.0
Or see this region's nucleotide sequence