Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0637 and DvMF_0638 are separated by 5 nucleotides DvMF_0638 and DvMF_0639 overlap by 4 nucleotides DvMF_0639 and DvMF_0640 overlap by 4 nucleotides
DvMF_0637: DvMF_0637 - Radical SAM domain protein (RefSeq), at 760,454 to 762,220
_0637
DvMF_0638: DvMF_0638 - hypothetical protein (RefSeq), at 762,226 to 762,693
_0638
DvMF_0639: DvMF_0639 - Methyltransferase type 11 (RefSeq), at 762,690 to 763,613
_0639
DvMF_0640: DvMF_0640 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 763,610 to 766,318
_0640
Position (kb) 762
763 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 761.545 kb on - strand, within DvMF_0637 at 761.567 kb on + strand, within DvMF_0637 at 761.712 kb on - strand, within DvMF_0637 at 761.728 kb on - strand, within DvMF_0637 at 761.863 kb on + strand, within DvMF_0637 at 761.873 kb on - strand, within DvMF_0637 at 762.057 kb on - strand at 762.130 kb on - strand at 762.359 kb on + strand, within DvMF_0638 at 762.490 kb on - strand, within DvMF_0638 at 762.521 kb on + strand, within DvMF_0638 at 762.529 kb on - strand, within DvMF_0638 at 762.858 kb on + strand, within DvMF_0639 at 762.866 kb on - strand, within DvMF_0639 at 762.882 kb on + strand, within DvMF_0639 at 763.063 kb on + strand, within DvMF_0639 at 763.066 kb on - strand, within DvMF_0639 at 763.071 kb on - strand, within DvMF_0639 at 763.076 kb on - strand, within DvMF_0639 at 763.162 kb on + strand, within DvMF_0639
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 761,545 - DvMF_0637 0.62 -3.8 761,567 + DvMF_0637 0.63 -1.1 761,712 - DvMF_0637 0.71 -0.6 761,728 - DvMF_0637 0.72 -1.1 761,863 + DvMF_0637 0.80 -0.8 761,873 - DvMF_0637 0.80 -2.2 762,057 - -0.3 762,130 - -0.6 762,359 + DvMF_0638 0.28 -0.1 762,490 - DvMF_0638 0.56 -0.2 762,521 + DvMF_0638 0.63 +1.3 762,529 - DvMF_0638 0.65 -0.4 762,858 + DvMF_0639 0.18 -1.9 762,866 - DvMF_0639 0.19 +0.2 762,882 + DvMF_0639 0.21 -0.2 763,063 + DvMF_0639 0.40 -1.6 763,066 - DvMF_0639 0.41 -1.2 763,071 - DvMF_0639 0.41 -0.2 763,076 - DvMF_0639 0.42 +0.6 763,162 + DvMF_0639 0.51 +0.6
Or see this region's nucleotide sequence