Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0516

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0515 and DvMF_0516 are separated by 316 nucleotidesDvMF_0516 and DvMF_0517 are separated by 28 nucleotides DvMF_0515: DvMF_0515 - sulfoacetaldehyde acetyltransferase (RefSeq), at 607,079 to 608,821 _0515 DvMF_0516: DvMF_0516 - aminotransferase class-III (RefSeq), at 609,138 to 610,517 _0516 DvMF_0517: DvMF_0517 - alanine dehydrogenase (RefSeq), at 610,546 to 611,655 _0517 Position (kb) 609 610 611Strain fitness (log2 ratio) -2 -1 0 1at 608.785 kb on - strandat 609.264 kb on + strandat 609.388 kb on - strand, within DvMF_0516at 609.656 kb on - strand, within DvMF_0516at 609.865 kb on - strand, within DvMF_0516at 609.995 kb on + strand, within DvMF_0516at 610.055 kb on + strand, within DvMF_0516at 610.063 kb on - strand, within DvMF_0516at 610.193 kb on + strand, within DvMF_0516at 610.233 kb on - strand, within DvMF_0516at 610.252 kb on + strand, within DvMF_0516at 610.283 kb on - strand, within DvMF_0516at 610.334 kb on + strand, within DvMF_0516at 610.475 kb on + strandat 610.514 kb on - strandat 610.528 kb on - strandat 611.311 kb on - strand, within DvMF_0517at 611.463 kb on + strand, within DvMF_0517at 611.489 kb on - strand, within DvMF_0517at 611.503 kb on + strand, within DvMF_0517at 611.504 kb on - strand, within DvMF_0517

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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608,785 - -2.0
609,264 + -0.1
609,388 - DvMF_0516 0.18 -0.7
609,656 - DvMF_0516 0.38 -1.1
609,865 - DvMF_0516 0.53 -0.1
609,995 + DvMF_0516 0.62 +0.0
610,055 + DvMF_0516 0.66 -0.2
610,063 - DvMF_0516 0.67 -0.4
610,193 + DvMF_0516 0.76 +1.2
610,233 - DvMF_0516 0.79 -0.5
610,252 + DvMF_0516 0.81 +0.4
610,283 - DvMF_0516 0.83 +0.3
610,334 + DvMF_0516 0.87 -1.6
610,475 + -1.6
610,514 - -0.9
610,528 - -1.2
611,311 - DvMF_0517 0.69 -0.8
611,463 + DvMF_0517 0.83 -0.1
611,489 - DvMF_0517 0.85 -1.4
611,503 + DvMF_0517 0.86 -0.3
611,504 - DvMF_0517 0.86 -0.2

Or see this region's nucleotide sequence