Experiment: MoYLS4 with Vancomycin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0509 and DvMF_0510 are separated by 162 nucleotides DvMF_0510 and DvMF_0511 are separated by 146 nucleotides
DvMF_0509: DvMF_0509 - diguanylate cyclase (RefSeq), at 599,259 to 600,755
_0509
DvMF_0510: DvMF_0510 - C_GCAxxG_C_C family protein (RefSeq), at 600,918 to 601,412
_0510
DvMF_0511: DvMF_0511 - transcriptional regulator, LysR family (RefSeq), at 601,559 to 603,658
_0511
Position (kb) 600
601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 600.246 kb on + strand, within DvMF_0509 at 600.357 kb on - strand, within DvMF_0509 at 600.359 kb on + strand, within DvMF_0509 at 600.367 kb on - strand, within DvMF_0509 at 600.594 kb on + strand, within DvMF_0509 at 600.641 kb on - strand at 600.848 kb on + strand at 600.866 kb on - strand at 600.893 kb on + strand at 600.911 kb on + strand at 600.924 kb on - strand at 601.227 kb on + strand, within DvMF_0510 at 601.267 kb on - strand, within DvMF_0510 at 601.574 kb on + strand at 601.582 kb on - strand at 601.794 kb on + strand, within DvMF_0511 at 602.034 kb on + strand, within DvMF_0511 at 602.121 kb on + strand, within DvMF_0511 at 602.135 kb on - strand, within DvMF_0511 at 602.135 kb on - strand, within DvMF_0511 at 602.139 kb on - strand, within DvMF_0511 at 602.146 kb on + strand, within DvMF_0511 at 602.154 kb on - strand, within DvMF_0511 at 602.180 kb on - strand, within DvMF_0511 at 602.329 kb on + strand, within DvMF_0511 at 602.329 kb on + strand, within DvMF_0511
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml remove 600,246 + DvMF_0509 0.66 -0.9 600,357 - DvMF_0509 0.73 +0.5 600,359 + DvMF_0509 0.73 -0.3 600,367 - DvMF_0509 0.74 +0.3 600,594 + DvMF_0509 0.89 +0.3 600,641 - -0.5 600,848 + -0.8 600,866 - -0.1 600,893 + -1.1 600,911 + -3.7 600,924 - -0.6 601,227 + DvMF_0510 0.62 -1.6 601,267 - DvMF_0510 0.71 -2.3 601,574 + -0.6 601,582 - +0.6 601,794 + DvMF_0511 0.11 -0.8 602,034 + DvMF_0511 0.23 -0.9 602,121 + DvMF_0511 0.27 -0.6 602,135 - DvMF_0511 0.27 -0.1 602,135 - DvMF_0511 0.27 -1.3 602,139 - DvMF_0511 0.28 -0.7 602,146 + DvMF_0511 0.28 -0.3 602,154 - DvMF_0511 0.28 -1.4 602,180 - DvMF_0511 0.30 -0.1 602,329 + DvMF_0511 0.37 -1.1 602,329 + DvMF_0511 0.37 -1.4
Or see this region's nucleotide sequence