Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0509

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0508 and DvMF_0509 are separated by 350 nucleotidesDvMF_0509 and DvMF_0510 are separated by 162 nucleotidesDvMF_0510 and DvMF_0511 are separated by 146 nucleotides DvMF_0508: DvMF_0508 - glycosyl transferase group 1 (RefSeq), at 596,995 to 598,908 _0508 DvMF_0509: DvMF_0509 - diguanylate cyclase (RefSeq), at 599,259 to 600,755 _0509 DvMF_0510: DvMF_0510 - C_GCAxxG_C_C family protein (RefSeq), at 600,918 to 601,412 _0510 DvMF_0511: DvMF_0511 - transcriptional regulator, LysR family (RefSeq), at 601,559 to 603,658 _0511 Position (kb) 599 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1at 598.267 kb on - strand, within DvMF_0508at 598.267 kb on - strand, within DvMF_0508at 598.358 kb on + strand, within DvMF_0508at 598.358 kb on + strand, within DvMF_0508at 598.358 kb on + strand, within DvMF_0508at 598.421 kb on - strand, within DvMF_0508at 598.484 kb on + strand, within DvMF_0508at 598.570 kb on - strand, within DvMF_0508at 598.628 kb on + strand, within DvMF_0508at 598.770 kb on - strandat 598.787 kb on - strandat 598.792 kb on - strandat 599.081 kb on - strandat 599.096 kb on - strandat 599.121 kb on - strandat 599.259 kb on + strandat 599.351 kb on - strandat 599.760 kb on - strand, within DvMF_0509at 600.246 kb on + strand, within DvMF_0509at 600.357 kb on - strand, within DvMF_0509at 600.359 kb on + strand, within DvMF_0509at 600.367 kb on - strand, within DvMF_0509at 600.594 kb on + strand, within DvMF_0509at 600.641 kb on - strandat 600.848 kb on + strandat 600.866 kb on - strandat 600.893 kb on + strandat 600.911 kb on + strandat 600.924 kb on - strandat 601.227 kb on + strand, within DvMF_0510at 601.267 kb on - strand, within DvMF_0510at 601.574 kb on + strandat 601.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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598,267 - DvMF_0508 0.66 -1.1
598,267 - DvMF_0508 0.66 -0.7
598,358 + DvMF_0508 0.71 -2.7
598,358 + DvMF_0508 0.71 -0.6
598,358 + DvMF_0508 0.71 -1.4
598,421 - DvMF_0508 0.75 -0.6
598,484 + DvMF_0508 0.78 -0.9
598,570 - DvMF_0508 0.82 -0.4
598,628 + DvMF_0508 0.85 +0.3
598,770 - -0.4
598,787 - -0.7
598,792 - -0.4
599,081 - -1.8
599,096 - -0.9
599,121 - -0.5
599,259 + +0.7
599,351 - -0.7
599,760 - DvMF_0509 0.33 +0.7
600,246 + DvMF_0509 0.66 -0.9
600,357 - DvMF_0509 0.73 +0.5
600,359 + DvMF_0509 0.73 -0.3
600,367 - DvMF_0509 0.74 +0.3
600,594 + DvMF_0509 0.89 +0.3
600,641 - -0.5
600,848 + -0.8
600,866 - -0.1
600,893 + -1.1
600,911 + -3.7
600,924 - -0.6
601,227 + DvMF_0510 0.62 -1.6
601,267 - DvMF_0510 0.71 -2.3
601,574 + -0.6
601,582 - +0.6

Or see this region's nucleotide sequence