Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0438

Experiment: MoYLS4 with Vancomycin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0437 and DvMF_0438 are separated by 112 nucleotidesDvMF_0438 and DvMF_0439 are separated by 0 nucleotides DvMF_0437: DvMF_0437 - magnesium-translocating P-type ATPase (RefSeq), at 511,693 to 514,335 _0437 DvMF_0438: DvMF_0438 - hypothetical protein (RefSeq), at 514,448 to 514,726 _0438 DvMF_0439: DvMF_0439 - phosphoglyceromutase (RefSeq), at 514,727 to 516,400 _0439 Position (kb) 514 515Strain fitness (log2 ratio) -1 0 1at 513.489 kb on + strand, within DvMF_0437at 513.543 kb on + strand, within DvMF_0437at 513.630 kb on - strand, within DvMF_0437at 513.705 kb on + strand, within DvMF_0437at 513.799 kb on - strand, within DvMF_0437at 513.854 kb on - strand, within DvMF_0437at 513.937 kb on + strand, within DvMF_0437at 513.968 kb on + strand, within DvMF_0437at 513.971 kb on - strand, within DvMF_0437at 514.042 kb on - strand, within DvMF_0437at 514.253 kb on - strandat 514.647 kb on - strand, within DvMF_0438

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 1 mg/ml
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513,489 + DvMF_0437 0.68 -0.3
513,543 + DvMF_0437 0.70 -0.5
513,630 - DvMF_0437 0.73 -1.0
513,705 + DvMF_0437 0.76 -1.6
513,799 - DvMF_0437 0.80 -0.7
513,854 - DvMF_0437 0.82 -0.9
513,937 + DvMF_0437 0.85 -0.9
513,968 + DvMF_0437 0.86 +0.1
513,971 - DvMF_0437 0.86 +0.7
514,042 - DvMF_0437 0.89 -0.5
514,253 - -0.6
514,647 - DvMF_0438 0.71 -0.0

Or see this region's nucleotide sequence