Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00805

Experiment: formate vitamin complete

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMJJ_RS00800 and MMJJ_RS00805 are separated by 67 nucleotidesMMJJ_RS00805 and MMJJ_RS00810 are separated by 5 nucleotidesMMJJ_RS00810 and MMJJ_RS00815 are separated by 51 nucleotides MMJJ_RS00800: MMJJ_RS00800 - MFS transporter, at 151,424 to 152,728 _RS00800 MMJJ_RS00805: MMJJ_RS00805 - uroporphyrinogen decarboxylase, at 152,796 to 153,659 _RS00805 MMJJ_RS00810: MMJJ_RS00810 - GTP-binding protein, at 153,665 to 154,573 _RS00810 MMJJ_RS00815: MMJJ_RS00815 - ASKHA domain-containing protein, at 154,625 to 156,403 _RS00815 Position (kb) 152 153 154Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 151.908 kb on + strand, within MMJJ_RS00800at 151.913 kb on + strand, within MMJJ_RS00800at 151.915 kb on - strand, within MMJJ_RS00800at 151.915 kb on - strand, within MMJJ_RS00800at 151.915 kb on - strand, within MMJJ_RS00800at 151.915 kb on - strand, within MMJJ_RS00800at 151.916 kb on + strand, within MMJJ_RS00800at 151.916 kb on + strand, within MMJJ_RS00800at 151.916 kb on + strand, within MMJJ_RS00800at 151.916 kb on + strand, within MMJJ_RS00800at 151.923 kb on - strand, within MMJJ_RS00800at 151.924 kb on + strand, within MMJJ_RS00800at 151.924 kb on + strand, within MMJJ_RS00800at 151.938 kb on - strand, within MMJJ_RS00800at 151.938 kb on - strand, within MMJJ_RS00800at 151.957 kb on + strand, within MMJJ_RS00800at 151.985 kb on - strand, within MMJJ_RS00800at 151.986 kb on + strand, within MMJJ_RS00800at 151.986 kb on + strand, within MMJJ_RS00800at 151.987 kb on - strand, within MMJJ_RS00800at 151.987 kb on - strand, within MMJJ_RS00800at 151.987 kb on - strand, within MMJJ_RS00800at 151.987 kb on - strand, within MMJJ_RS00800at 151.988 kb on + strand, within MMJJ_RS00800at 151.988 kb on + strand, within MMJJ_RS00800at 151.988 kb on + strand, within MMJJ_RS00800at 151.988 kb on + strand, within MMJJ_RS00800at 151.988 kb on + strand, within MMJJ_RS00800at 151.988 kb on + strand, within MMJJ_RS00800at 151.994 kb on + strand, within MMJJ_RS00800at 152.097 kb on - strand, within MMJJ_RS00800at 152.098 kb on + strand, within MMJJ_RS00800at 152.098 kb on + strand, within MMJJ_RS00800at 152.098 kb on + strand, within MMJJ_RS00800at 152.101 kb on - strand, within MMJJ_RS00800at 152.101 kb on - strand, within MMJJ_RS00800at 152.101 kb on - strand, within MMJJ_RS00800at 152.113 kb on - strand, within MMJJ_RS00800at 152.116 kb on - strand, within MMJJ_RS00800at 152.116 kb on - strand, within MMJJ_RS00800at 152.117 kb on + strand, within MMJJ_RS00800at 152.157 kb on - strand, within MMJJ_RS00800at 152.158 kb on + strand, within MMJJ_RS00800at 152.171 kb on - strand, within MMJJ_RS00800at 152.172 kb on + strand, within MMJJ_RS00800at 152.174 kb on - strand, within MMJJ_RS00800at 152.175 kb on + strand, within MMJJ_RS00800at 152.175 kb on + strand, within MMJJ_RS00800at 152.175 kb on + strand, within MMJJ_RS00800at 152.193 kb on + strand, within MMJJ_RS00800at 152.217 kb on + strand, within MMJJ_RS00800at 152.221 kb on - strand, within MMJJ_RS00800at 152.222 kb on + strand, within MMJJ_RS00800at 152.232 kb on - strand, within MMJJ_RS00800at 152.252 kb on - strand, within MMJJ_RS00800at 152.253 kb on + strand, within MMJJ_RS00800at 152.293 kb on + strand, within MMJJ_RS00800at 152.324 kb on + strand, within MMJJ_RS00800at 152.352 kb on - strand, within MMJJ_RS00800at 152.368 kb on + strand, within MMJJ_RS00800at 152.368 kb on + strand, within MMJJ_RS00800at 152.372 kb on - strand, within MMJJ_RS00800at 152.373 kb on + strand, within MMJJ_RS00800at 152.379 kb on - strand, within MMJJ_RS00800at 152.379 kb on - strand, within MMJJ_RS00800at 152.379 kb on - strand, within MMJJ_RS00800at 152.382 kb on - strand, within MMJJ_RS00800at 152.382 kb on - strand, within MMJJ_RS00800at 152.400 kb on + strand, within MMJJ_RS00800at 152.424 kb on - strand, within MMJJ_RS00800at 152.430 kb on + strand, within MMJJ_RS00800at 152.436 kb on - strand, within MMJJ_RS00800at 152.442 kb on + strand, within MMJJ_RS00800at 152.445 kb on - strand, within MMJJ_RS00800at 152.445 kb on - strand, within MMJJ_RS00800at 152.449 kb on + strand, within MMJJ_RS00800at 152.478 kb on - strand, within MMJJ_RS00800at 152.478 kb on - strand, within MMJJ_RS00800at 152.478 kb on - strand, within MMJJ_RS00800at 152.478 kb on - strand, within MMJJ_RS00800at 152.478 kb on - strand, within MMJJ_RS00800at 152.479 kb on + strand, within MMJJ_RS00800at 152.623 kb on + strandat 152.665 kb on + strandat 152.727 kb on + strandat 152.769 kb on + strandat 152.779 kb on - strandat 152.780 kb on + strandat 152.780 kb on + strandat 152.796 kb on + strandat 152.885 kb on + strand, within MMJJ_RS00805at 152.936 kb on - strand, within MMJJ_RS00805at 152.937 kb on + strand, within MMJJ_RS00805at 152.937 kb on + strand, within MMJJ_RS00805at 152.937 kb on + strand, within MMJJ_RS00805at 152.947 kb on - strand, within MMJJ_RS00805at 152.948 kb on + strand, within MMJJ_RS00805at 152.970 kb on + strand, within MMJJ_RS00805at 152.970 kb on + strand, within MMJJ_RS00805at 153.071 kb on + strand, within MMJJ_RS00805at 153.185 kb on - strand, within MMJJ_RS00805at 153.185 kb on - strand, within MMJJ_RS00805at 153.185 kb on - strand, within MMJJ_RS00805at 153.186 kb on + strand, within MMJJ_RS00805at 153.186 kb on + strand, within MMJJ_RS00805at 153.189 kb on + strand, within MMJJ_RS00805at 153.189 kb on + strand, within MMJJ_RS00805at 153.223 kb on + strand, within MMJJ_RS00805at 153.289 kb on - strand, within MMJJ_RS00805at 153.294 kb on - strand, within MMJJ_RS00805at 153.295 kb on + strand, within MMJJ_RS00805at 153.295 kb on + strand, within MMJJ_RS00805at 153.295 kb on + strand, within MMJJ_RS00805at 153.295 kb on + strand, within MMJJ_RS00805at 153.364 kb on - strand, within MMJJ_RS00805at 153.390 kb on - strand, within MMJJ_RS00805at 153.390 kb on - strand, within MMJJ_RS00805at 153.434 kb on + strand, within MMJJ_RS00805at 153.449 kb on - strand, within MMJJ_RS00805at 153.452 kb on - strand, within MMJJ_RS00805at 153.452 kb on - strand, within MMJJ_RS00805at 153.453 kb on + strand, within MMJJ_RS00805at 153.537 kb on - strand, within MMJJ_RS00805at 153.537 kb on - strand, within MMJJ_RS00805at 153.538 kb on + strand, within MMJJ_RS00805at 153.538 kb on + strand, within MMJJ_RS00805at 153.559 kb on - strand, within MMJJ_RS00805at 153.560 kb on + strand, within MMJJ_RS00805at 153.602 kb on - strandat 153.602 kb on - strandat 153.603 kb on + strandat 153.603 kb on + strandat 153.603 kb on + strandat 153.604 kb on - strandat 153.618 kb on - strandat 153.620 kb on - strandat 153.621 kb on + strandat 153.621 kb on + strandat 153.658 kb on + strandat 153.661 kb on - strandat 153.661 kb on - strandat 153.662 kb on + strandat 153.673 kb on - strandat 153.673 kb on - strandat 153.673 kb on - strandat 153.677 kb on + strandat 153.680 kb on - strandat 153.690 kb on + strandat 153.720 kb on + strandat 153.780 kb on - strand, within MMJJ_RS00810at 153.780 kb on - strand, within MMJJ_RS00810at 153.781 kb on + strand, within MMJJ_RS00810at 153.781 kb on + strand, within MMJJ_RS00810at 153.812 kb on - strand, within MMJJ_RS00810at 153.833 kb on - strand, within MMJJ_RS00810at 153.834 kb on + strand, within MMJJ_RS00810at 153.843 kb on - strand, within MMJJ_RS00810at 153.856 kb on - strand, within MMJJ_RS00810at 153.962 kb on - strand, within MMJJ_RS00810at 153.962 kb on - strand, within MMJJ_RS00810at 153.963 kb on + strand, within MMJJ_RS00810at 154.021 kb on - strand, within MMJJ_RS00810at 154.041 kb on + strand, within MMJJ_RS00810at 154.041 kb on + strand, within MMJJ_RS00810at 154.047 kb on + strand, within MMJJ_RS00810at 154.054 kb on - strand, within MMJJ_RS00810at 154.055 kb on + strand, within MMJJ_RS00810at 154.061 kb on - strand, within MMJJ_RS00810at 154.062 kb on + strand, within MMJJ_RS00810at 154.076 kb on - strand, within MMJJ_RS00810at 154.082 kb on + strand, within MMJJ_RS00810at 154.109 kb on + strand, within MMJJ_RS00810at 154.121 kb on + strand, within MMJJ_RS00810at 154.127 kb on + strand, within MMJJ_RS00810at 154.130 kb on - strand, within MMJJ_RS00810at 154.131 kb on + strand, within MMJJ_RS00810at 154.131 kb on + strand, within MMJJ_RS00810at 154.211 kb on - strand, within MMJJ_RS00810at 154.229 kb on - strand, within MMJJ_RS00810at 154.230 kb on + strand, within MMJJ_RS00810at 154.284 kb on + strand, within MMJJ_RS00810at 154.284 kb on + strand, within MMJJ_RS00810at 154.337 kb on - strand, within MMJJ_RS00810at 154.407 kb on - strand, within MMJJ_RS00810at 154.409 kb on - strand, within MMJJ_RS00810at 154.409 kb on - strand, within MMJJ_RS00810at 154.410 kb on + strand, within MMJJ_RS00810at 154.410 kb on + strand, within MMJJ_RS00810at 154.432 kb on - strand, within MMJJ_RS00810at 154.481 kb on - strand, within MMJJ_RS00810at 154.482 kb on + strand, within MMJJ_RS00810at 154.506 kb on + strandat 154.517 kb on - strandat 154.518 kb on + strandat 154.520 kb on + strandat 154.553 kb on - strandat 154.554 kb on + strandat 154.576 kb on - strandat 154.586 kb on - strandat 154.607 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction formate vitamin complete
remove
151,908 + MMJJ_RS00800 0.37 +0.7
151,913 + MMJJ_RS00800 0.37 +0.1
151,915 - MMJJ_RS00800 0.38 +0.3
151,915 - MMJJ_RS00800 0.38 +0.1
151,915 - MMJJ_RS00800 0.38 -0.0
151,915 - MMJJ_RS00800 0.38 -0.6
151,916 + MMJJ_RS00800 0.38 -0.8
151,916 + MMJJ_RS00800 0.38 -0.8
151,916 + MMJJ_RS00800 0.38 -1.2
151,916 + MMJJ_RS00800 0.38 +0.4
151,923 - MMJJ_RS00800 0.38 +1.3
151,924 + MMJJ_RS00800 0.38 -1.4
151,924 + MMJJ_RS00800 0.38 -0.1
151,938 - MMJJ_RS00800 0.39 -0.1
151,938 - MMJJ_RS00800 0.39 -0.0
151,957 + MMJJ_RS00800 0.41 -0.2
151,985 - MMJJ_RS00800 0.43 +0.4
151,986 + MMJJ_RS00800 0.43 -0.9
151,986 + MMJJ_RS00800 0.43 -0.5
151,987 - MMJJ_RS00800 0.43 -0.9
151,987 - MMJJ_RS00800 0.43 +0.0
151,987 - MMJJ_RS00800 0.43 -0.4
151,987 - MMJJ_RS00800 0.43 -0.2
151,988 + MMJJ_RS00800 0.43 +1.0
151,988 + MMJJ_RS00800 0.43 -0.4
151,988 + MMJJ_RS00800 0.43 -0.6
151,988 + MMJJ_RS00800 0.43 -0.2
151,988 + MMJJ_RS00800 0.43 +0.1
151,988 + MMJJ_RS00800 0.43 -0.4
151,994 + MMJJ_RS00800 0.44 -1.3
152,097 - MMJJ_RS00800 0.52 +0.6
152,098 + MMJJ_RS00800 0.52 +0.1
152,098 + MMJJ_RS00800 0.52 +0.4
152,098 + MMJJ_RS00800 0.52 -1.3
152,101 - MMJJ_RS00800 0.52 -1.1
152,101 - MMJJ_RS00800 0.52 +0.2
152,101 - MMJJ_RS00800 0.52 -0.9
152,113 - MMJJ_RS00800 0.53 -0.0
152,116 - MMJJ_RS00800 0.53 +0.6
152,116 - MMJJ_RS00800 0.53 +0.4
152,117 + MMJJ_RS00800 0.53 +0.2
152,157 - MMJJ_RS00800 0.56 +0.2
152,158 + MMJJ_RS00800 0.56 -0.3
152,171 - MMJJ_RS00800 0.57 +1.2
152,172 + MMJJ_RS00800 0.57 -0.1
152,174 - MMJJ_RS00800 0.57 -0.1
152,175 + MMJJ_RS00800 0.58 -0.2
152,175 + MMJJ_RS00800 0.58 -0.1
152,175 + MMJJ_RS00800 0.58 -0.1
152,193 + MMJJ_RS00800 0.59 +0.4
152,217 + MMJJ_RS00800 0.61 +0.4
152,221 - MMJJ_RS00800 0.61 +0.0
152,222 + MMJJ_RS00800 0.61 +0.1
152,232 - MMJJ_RS00800 0.62 +0.7
152,252 - MMJJ_RS00800 0.63 +1.1
152,253 + MMJJ_RS00800 0.64 -0.5
152,293 + MMJJ_RS00800 0.67 +0.3
152,324 + MMJJ_RS00800 0.69 +0.7
152,352 - MMJJ_RS00800 0.71 -1.1
152,368 + MMJJ_RS00800 0.72 -0.1
152,368 + MMJJ_RS00800 0.72 -0.0
152,372 - MMJJ_RS00800 0.73 -0.5
152,373 + MMJJ_RS00800 0.73 -0.6
152,379 - MMJJ_RS00800 0.73 -0.3
152,379 - MMJJ_RS00800 0.73 +0.4
152,379 - MMJJ_RS00800 0.73 -0.2
152,382 - MMJJ_RS00800 0.73 -0.2
152,382 - MMJJ_RS00800 0.73 -0.5
152,400 + MMJJ_RS00800 0.75 +0.7
152,424 - MMJJ_RS00800 0.77 +0.1
152,430 + MMJJ_RS00800 0.77 -0.3
152,436 - MMJJ_RS00800 0.78 +0.4
152,442 + MMJJ_RS00800 0.78 -0.4
152,445 - MMJJ_RS00800 0.78 +0.7
152,445 - MMJJ_RS00800 0.78 +0.9
152,449 + MMJJ_RS00800 0.79 +0.0
152,478 - MMJJ_RS00800 0.81 -0.3
152,478 - MMJJ_RS00800 0.81 -0.7
152,478 - MMJJ_RS00800 0.81 +0.1
152,478 - MMJJ_RS00800 0.81 +0.7
152,478 - MMJJ_RS00800 0.81 -0.4
152,479 + MMJJ_RS00800 0.81 -0.1
152,623 + -0.2
152,665 + -0.6
152,727 + +2.0
152,769 + +0.4
152,779 - +0.1
152,780 + -0.6
152,780 + -0.3
152,796 + -0.8
152,885 + MMJJ_RS00805 0.10 -0.3
152,936 - MMJJ_RS00805 0.16 +0.4
152,937 + MMJJ_RS00805 0.16 +0.1
152,937 + MMJJ_RS00805 0.16 -1.2
152,937 + MMJJ_RS00805 0.16 -0.6
152,947 - MMJJ_RS00805 0.17 -0.6
152,948 + MMJJ_RS00805 0.18 -0.4
152,970 + MMJJ_RS00805 0.20 -0.2
152,970 + MMJJ_RS00805 0.20 -0.7
153,071 + MMJJ_RS00805 0.32 -0.6
153,185 - MMJJ_RS00805 0.45 +0.4
153,185 - MMJJ_RS00805 0.45 +0.2
153,185 - MMJJ_RS00805 0.45 -0.3
153,186 + MMJJ_RS00805 0.45 -0.3
153,186 + MMJJ_RS00805 0.45 -0.3
153,189 + MMJJ_RS00805 0.45 +0.4
153,189 + MMJJ_RS00805 0.45 -1.0
153,223 + MMJJ_RS00805 0.49 -0.0
153,289 - MMJJ_RS00805 0.57 -0.4
153,294 - MMJJ_RS00805 0.58 -0.3
153,295 + MMJJ_RS00805 0.58 -0.8
153,295 + MMJJ_RS00805 0.58 -2.8
153,295 + MMJJ_RS00805 0.58 -0.7
153,295 + MMJJ_RS00805 0.58 -0.6
153,364 - MMJJ_RS00805 0.66 +0.3
153,390 - MMJJ_RS00805 0.69 -0.3
153,390 - MMJJ_RS00805 0.69 -0.7
153,434 + MMJJ_RS00805 0.74 +0.0
153,449 - MMJJ_RS00805 0.76 +0.5
153,452 - MMJJ_RS00805 0.76 -0.6
153,452 - MMJJ_RS00805 0.76 -0.5
153,453 + MMJJ_RS00805 0.76 -0.9
153,537 - MMJJ_RS00805 0.86 -0.5
153,537 - MMJJ_RS00805 0.86 -1.4
153,538 + MMJJ_RS00805 0.86 -0.4
153,538 + MMJJ_RS00805 0.86 +0.4
153,559 - MMJJ_RS00805 0.88 -0.1
153,560 + MMJJ_RS00805 0.88 +1.3
153,602 - +0.8
153,602 - -0.0
153,603 + -1.3
153,603 + -0.2
153,603 + +0.3
153,604 - +0.1
153,618 - +0.4
153,620 - -0.5
153,621 + +0.4
153,621 + +0.0
153,658 + +1.2
153,661 - -0.4
153,661 - +0.0
153,662 + -0.4
153,673 - +0.0
153,673 - -0.7
153,673 - -1.7
153,677 + +0.1
153,680 - +0.6
153,690 + -0.6
153,720 + +0.9
153,780 - MMJJ_RS00810 0.13 -0.4
153,780 - MMJJ_RS00810 0.13 +1.5
153,781 + MMJJ_RS00810 0.13 -1.3
153,781 + MMJJ_RS00810 0.13 -0.2
153,812 - MMJJ_RS00810 0.16 +0.2
153,833 - MMJJ_RS00810 0.18 +0.3
153,834 + MMJJ_RS00810 0.19 -1.1
153,843 - MMJJ_RS00810 0.20 +0.1
153,856 - MMJJ_RS00810 0.21 +0.4
153,962 - MMJJ_RS00810 0.33 +0.0
153,962 - MMJJ_RS00810 0.33 -0.3
153,963 + MMJJ_RS00810 0.33 +0.3
154,021 - MMJJ_RS00810 0.39 -0.1
154,041 + MMJJ_RS00810 0.41 -0.9
154,041 + MMJJ_RS00810 0.41 -0.2
154,047 + MMJJ_RS00810 0.42 +0.5
154,054 - MMJJ_RS00810 0.43 -0.7
154,055 + MMJJ_RS00810 0.43 -1.9
154,061 - MMJJ_RS00810 0.44 +0.7
154,062 + MMJJ_RS00810 0.44 -0.0
154,076 - MMJJ_RS00810 0.45 +0.4
154,082 + MMJJ_RS00810 0.46 +0.9
154,109 + MMJJ_RS00810 0.49 +0.7
154,121 + MMJJ_RS00810 0.50 -1.1
154,127 + MMJJ_RS00810 0.51 -0.3
154,130 - MMJJ_RS00810 0.51 -0.0
154,131 + MMJJ_RS00810 0.51 -0.1
154,131 + MMJJ_RS00810 0.51 -0.2
154,211 - MMJJ_RS00810 0.60 -0.1
154,229 - MMJJ_RS00810 0.62 +0.5
154,230 + MMJJ_RS00810 0.62 +0.4
154,284 + MMJJ_RS00810 0.68 +1.4
154,284 + MMJJ_RS00810 0.68 -0.4
154,337 - MMJJ_RS00810 0.74 +0.0
154,407 - MMJJ_RS00810 0.82 +0.5
154,409 - MMJJ_RS00810 0.82 +0.3
154,409 - MMJJ_RS00810 0.82 -0.8
154,410 + MMJJ_RS00810 0.82 +0.6
154,410 + MMJJ_RS00810 0.82 +0.3
154,432 - MMJJ_RS00810 0.84 +1.3
154,481 - MMJJ_RS00810 0.90 -1.0
154,482 + MMJJ_RS00810 0.90 -1.0
154,506 + +0.5
154,517 - -0.7
154,518 + -0.5
154,520 + -0.5
154,553 - -1.4
154,554 + +0.2
154,576 - +0.8
154,586 - -0.1
154,607 - -0.3

Or see this region's nucleotide sequence